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[178085_at] 7TM receptor, srx family

Description F32H5.6 /REP_DB=WormBase Gene ID /WP=CE17752 /TR=P92008 /GB=CAB04254.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 20      6grp_cgc > 98      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 46.6
(-0.8)
A 		48.2
(-0.7)
A 		9.4
(-3)
A 		109
(3)
A 		100
B 62
(0.9)
A 		26.8
(-1.4)
A 		2.3
(-3)
A 		93.6
(3)
A 		91
C 31.4
(-1.3)
A 		25.9
(-1.7)
A 		3.6
(-3)
A 		104.4
(3)
P 		101
avr 46.7
(-0.4) 		33.6
(-1.2) 		5.1
(-3) 		102.3
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 78.8
(0.9)
A 		7.7
(-3)
A 		90.6
(1.6)
P 		84.4
(1.2)
A 		116.2
(3)
P 		33.2
(-1.6)
A 		109
B 13.5
(-2.6)
A 		20.8
(-2.2)
A 		3.9
(-3)
A 		50.1
(-0.9)
A 		135
(3)
P 		44.1
(-1.2)
P 		131
C 14.9
(-3)
A 		78.6
(3)
A 		69
(2.1)
A 		67.8
(2)
P 		57.7
(1)
P 		43.7
(-0.3)
A 		64
avr 35.7
(-3) 		35.7
(-3) 		54.5
(-1.3) 		67.4
(-0.2) 		103
(3) 		40.3
(-2.6) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 17
(3)
A 		10.5
(0.3)
A 		2.5
(-3)
A 		16
(2.6)
A 		15
B 19.8
(3)
A 		6.6
(-1.1)
A 		0.5
(-3)
A 		19.9
(3)
A 		19
C 10.4
(0.3)
A 		7.5
(-0.7)
A 		1.3
(-3)
A 		17.6
(3)
P 		16
avr 15.7
(2.2) 		8.2
(-0.5) 		1.4
(-3) 		17.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 14.5
(-0.8)
A 		2.7
(-3)
A 		19.7
(0.1)
P 		21.4
(0.5)
A 		35.1
(3)
P 		8.1
(-2)
A 		32
B 4.7
(-2.6)
A 		6.9
(-2.3)
A 		1
(-3)
A 		13.3
(-1.6)
A 		54.8
(3)
P 		16.4
(-1.3)
P 		54
C 5.5
(-3)
A 		24
(3)
A 		17.6
(0.9)
A 		13.6
(-0.4)
P 		18.7
(1.3)
P 		14.6
(-0)
A 		19
avr 8.2
(-3) 		11.2
(-2.4) 		12.8
(-2) 		16.1
(-1.3) 		36.2
(3) 		13
(-2) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13653
Sequence Type Exemplar sequence
Representative Public ID F32H5.6 NCBI
Target Description F32H5.6 /REP_DB=WormBase Gene ID /WP=CE17752 /TR=P92008 /GB=CAB04254.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073914 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-125) (srx-125) mRNA, complete cds. 11/11 None
F32H5.6 ENSEMBL cdna:known chromosome:CEL140:V:13369916:13372582:1 gene:F32H5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043412 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13370082-13372403(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-125
Ensembl F32H5.6
Entrez Gene 185218 Entrez gene
SwissProt P92008 EMBL-EBI
WormBase CE36297 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03212 Hypothetical protein F32H5.6 [Caenorhabditis elegans] emb|CAB04254.2| Hypothetical protein F32H5.6 [Caenorhabditis elegans] ref|NP_506315.2| Serpentine Receptor, class X family member (srx-125) [Caenorhabditis elegans] 1.0E-161
blast CAE62611 Hypothetical protein CBG06729 [Caenorhabditis briggsae] 1.0E-99
blast CAB02907 Hypothetical protein F09F3.12 [Caenorhabditis elegans] ref|NP_506435.2| Serpentine Receptor, class X family member (srx-136) [Caenorhabditis elegans] 1.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506315.2 6 10-32,53-72,87-109,122-144,168-190,245-264
F32H5.6 6 10-32,53-72,87-109,122-144,168-190,245-264
Sequence
Target Sequence 
>C. ELEGANS:178085_AT
tccaacgtatgaatccgtgccacgaagtgttaatgtagggtttggtcaagttgctggatg
gggtgcttatattttgggtccattaattcaagtatgcatgtcgttcaaccgattttatgt
tttatactttccgatgtcttcaataaaagcttcgaattttccttttaccaataccgctat
atttttagcattatgtattgcagtcgtctacacagtgattggatttcctgacaaatgcgg
ttttgtatttgatccagaggtactgtcttggagaccggaagaatttgattgtgctctgtg
gttggctgactttattttctattctattctgatcctgtcaatcacttctaattcactcaa
ttttgccactttcttgaaacttgtttctagtcgaagtgtgctgcaagacacacttcactt
gatcgacatgatcaattgcacaatactcttcaaactcaattcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAACGTATGAATCCGTGCCACGA 642 587 252 Antisense
GGGTGCTTATATTTTGGGTCCATTA 705 495 312 Antisense
TCAAGTATGCATGTCGTTCAACCGA 100 633 339 Antisense
GTTTTATACTTTCCGATGTCTTCAA 137 449 370 Antisense
TTTCCTTTTACCAATACCGCTATAT 661 669 409 Antisense
ATTGCAGTCGTCTACACAGTGATTG 163 5 448 Antisense
TGATTGTGCTCTGTGGTTGGCTGAC 595 563 537 Antisense
GATCCTGTCAATCACTTCTAATTCA 130 417 582 Antisense
AATTCACTCAATTTTGCCACTTTCT 135 177 601 Antisense
GACACACTTCACTTGATCGACATGA 230 367 658 Antisense
AATACTCTTCAAACTCAATTCAGCA 219 173 693 Antisense
Sequence Source Affymetrix Proprietary Database