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[178084_at]

Description T26E4.9 /REP_DB=WormBase Gene ID /WP=CE16480 /TR=O45833 /GB=CAB03428.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 50      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 24.8
(0.1)
A 		32.5
(1.4)
A 		42
(3)
A 		7
(-3)
A 		35
B 45.2
(-1.1)
A 		72.9
(3)
P 		45.7
(-1)
A 		32.5
(-3)
A 		40
C 23.2
(-3)
A 		37.6
(2.7)
A 		38.3
(3)
A 		32.4
(0.7)
A 		15
avr 31.1
(-1.2) 		47.7
(3) 		42
(1.6) 		24
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 32.2
(-3)
A 		145.5
(0)
P 		182
(1)
P 		211.8
(1.8)
P 		176.5
(0.9)
P 		256.6
(3)
P 		224
B 39.5
(-3)
A 		196.3
(1)
P 		101.4
(-1.4)
P 		101.5
(-1.4)
P 		247.2
(2.3)
P 		273
(3)
P 		234
C 22.3
(-3)
A 		168.3
(0.6)
P 		76.2
(-1.7)
P 		179.4
(0.9)
P 		201.8
(1.5)
P 		264.2
(3)
P 		242
avr 31.3
(-3) 		170
(0.6) 		119.9
(-0.7) 		164.2
(0.4) 		208.5
(1.6) 		264.6
(3) 		233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9
(1.8)
A 		7.1
(0.7)
A 		11
(3)
A 		1
(-3)
A 		10
B 14.4
(1.1)
A 		18
(3)
P 		10.6
(-1)
A 		6.9
(-3)
A 		11
C 7.7
(-1.3)
A 		10.8
(1.1)
A 		13.3
(3)
A 		5.5
(-3)
A 		8
avr 10.4
(1.7) 		12
(3) 		11.6
(2.7) 		4.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 5.9
(-3)
A 		51.7
(1.9)
P 		39.6
(0.6)
P 		53.7
(2.1)
P 		53.3
(2)
P 		62.5
(3)
P 		57
B 13.7
(-3)
A 		65.3
(0.5)
P 		24.6
(-2.3)
P 		26.9
(-2.1)
P 		100.4
(2.9)
P 		101.8
(3)
P 		88
C 8.3
(-3)
A 		51.4
(0.2)
P 		19.4
(-2.2)
P 		36.1
(-0.9)
P 		65.3
(1.3)
P 		88.4
(3)
P 		80
avr 9.3
(-3) 		56.1
(0.7) 		27.9
(-1.5) 		38.9
(-0.6) 		73
(2.1) 		84.2
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14020
Sequence Type Exemplar sequence
Representative Public ID T26E4.9 NCBI
Target Description T26E4.9 /REP_DB=WormBase Gene ID /WP=CE16480 /TR=O45833 /GB=CAB03428.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074539 NCBI Caenorhabditis elegans T26E4.9 (T26E4.9) mRNA, complete cds. 11/11 None
SNAP00000017599 ENSEMBL cdna:SNAP chromosome:CEL140:V:15801796:15802100:-1 11/11 None
GENEFINDER00000017611 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15801796:15802100:-1 11/11 None
T26E4.9 ENSEMBL cdna:known chromosome:CEL140:V:15801796:15802100:-1 gene:T26E4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15801795-15802100(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E4.9
Entrez Gene 188935 Entrez gene
SwissProt O45833 EMBL-EBI
WormBase CE16480 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03428 Hypothetical protein T26E4.9 [Caenorhabditis elegans] ref|NP_506940.1| T26E4.9 [Caenorhabditis elegans] 3.0E-21
blast CAB03429 Hypothetical protein T26E4.10 [Caenorhabditis elegans] ref|NP_506939.1| T26E4.10 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506940.1 1 5-22
T26E4.9 1 5-22
SNAP00000017599 1 5-22
GENEFINDER00000017611 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:178084_AT
ttttttgattatttctctattcttcgtgttcctcgcaatttcaactacttttggtgaaaa
tggagagaccgctctcgagaacacttatggaatggctcctgaagaaggtgtgctcggcca
attgattcgagccaagaggcaatggggatgtggatgtgattgctgggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTTGATTATTTCTCTATTCTTC 658 675 24 Antisense
GATTATTTCTCTATTCTTCGTGTTC 669 429 30 Antisense
TCGTGTTCCTCGCAATTTCAACTAC 239 603 47 Antisense
CTCGCAATTTCAACTACTTTTGGTG 642 229 55 Antisense
AGAGACCGCTCTCGAGAACACTTAT 141 69 87 Antisense
GAACACTTATGGAATGGCTCCTGAA 318 351 102 Antisense
GGCTCCTGAAGAAGGTGTGCTCGGC 361 539 117 Antisense
AGAAGGTGTGCTCGGCCAATTGATT 424 75 126 Antisense
TCGGCCAATTGATTCGAGCCAAGAG 643 599 137 Antisense
GAGCCAAGAGGCAATGGGGATGTGG 128 385 152 Antisense
GGGGATGTGGATGTGATTGCTGGGG 99 499 167 Antisense
Sequence Source Affymetrix Proprietary Database