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[178083_s_at]

Description Y41E3.9 /REP_DB=WormBase Gene ID /WP=CE18377 /TR=Q9U2H4 /GB=CAB63365.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 97.5
(-3)
M 		156.2
(3)
A 		104.7
(-2.3)
A 		113.9
(-1.3)
A 		59
B 116.8
(-2.5)
P 		125.9
(3)
A 		123.2
(1.4)
A 		116
(-3)
P 		10
C 139.5
(-1)
P 		136.6
(-1.5)
A 		127.3
(-3)
A 		164.8
(3)
P 		38
avr 117.9
(-3) 		139.6
(3) 		118.4
(-2.9) 		131.6
(0.8) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 130.5
(-2.1)
M 		147
(-1.4)
P 		148.8
(-1.3)
A 		156
(-1)
A 		107.8
(-3)
A 		252
(3)
P 		144
B 99.6
(-3)
P 		133.1
(-1.2)
P 		118.6
(-2)
P 		113.5
(-2.3)
A 		156.3
(0)
P 		211.2
(3)
P 		112
C 156.8
(-0.1)
P 		137.7
(-0.9)
P 		89.1
(-3)
A 		108.8
(-2.2)
A 		154.3
(-0.2)
P 		230.1
(3)
P 		141
avr 129
(-2.5) 		139.3
(-1.9) 		118.8
(-3) 		126.1
(-2.6) 		139.5
(-1.9) 		231.1
(3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 35.5
(3)
M 		33.9
(2.5)
A 		27.4
(0.4)
A 		16.7
(-3)
A 		19
B 37.2
(3)
P 		31.1
(0.1)
A 		28.5
(-1.2)
A 		24.7
(-3)
P 		13
C 46.2
(3)
P 		39.3
(0.7)
A 		44.4
(2.4)
A 		27.8
(-3)
P 		18
avr 39.6
(3) 		34.8
(1.3) 		33.4
(0.7) 		23.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 24.1
(-3)
M 		52.3
(1.5)
P 		32.4
(-1.7)
A 		39.6
(-0.5)
A 		32.5
(-1.6)
A 		61.3
(3)
P 		37
B 34.6
(-2.3)
P 		44.3
(-1.1)
P 		28.8
(-3)
P 		30.1
(-2.8)
A 		63.5
(1.2)
P 		78.7
(3)
P 		50
C 58.1
(0.9)
P 		42
(-0.8)
P 		22.7
(-2.9)
A 		21.9
(-3)
A 		49.9
(0)
P 		77
(3)
P 		55
avr 38.9
(-1.5) 		46.2
(-0.5) 		28
(-3) 		30.5
(-2.7) 		48.6
(-0.2) 		72.3
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178083_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10014
Sequence Type Exemplar sequence
Representative Public ID Y41E3.9 NCBI
Target Description Y41E3.9 /REP_DB=WormBase Gene ID /WP=CE18377 /TR=Q9U2H4 /GB=CAB63365.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070413(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070413 NCBI Caenorhabditis elegans Y41E3.9 (Y41E3.9) mRNA, complete cds. 11/11 None
SNAP00000001442 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15025683:15036903:1 11/11 None
GENEFINDER00000001474 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15029161:15039330:1 11/11 None
Y41E3.9 ENSEMBL cdna:known chromosome:CEL140:IV:15026402:15036986:1 gene:Y41E3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15026407-15036909(+) 94.47 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41E3.9
Entrez Gene 178418 Entrez gene
SwissProt Q9U2H4 EMBL-EBI
WormBase CE18377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63365 Hypothetical protein Y41E3.9 [Caenorhabditis elegans] ref|NP_502814.1| Y41E3.9 [Caenorhabditis elegans] 0.0
blast CAE68125 Hypothetical protein CBG13770 [Caenorhabditis briggsae] 0.0
blast CAE56114 Hypothetical protein CBG23720 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR001326 EMBL-EBI Elongation factor 1, beta/beta/delta chain 6.9E-48
Sequence
Target Sequence 
>C. ELEGANS:178083_S_AT
atatgtcggccagtgctgccaagaatggaggtgtcgacatcgaggatactctggaatcct
gggaaactgcttcatcatgctttctgatcctttgccttctccttagaatcaataaaatcc
gaactacggcggttttgacgtcggctattaaagagggaaaacaatttctgattactgttt
ctaaaaagagctcattcatatttttaatggataatattacgaagggaaccaatttcgata
cgatttgtagaagagttgagaagattttatcggctgttcaacagggaaatcgtgtcttgc
agagtattggaacttttgcaaagacgaacaaatgcgtgcttcttctcaaaaaattcccgg
aactccgtgcagaaagtgagaattgccttcgagtaattcattcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGTCGGCCAGTGCTGCCAAGAA 524 21 3410 Antisense
GTGTCGACATCGAGGATACTCTGGA 544 487 3440 Antisense
TGGGAAACTGCTTCATCATGCTTTC 419 553 3469 Antisense
TTCATCATGCTTTCTGATCCTTTGC 579 687 3480 Antisense
CCTTTGCCTTCTCCTTAGAATCAAT 286 269 3498 Antisense
GCGGTTTTGACGTCGGCTATTAAAG 408 293 3538 Antisense
AAGATTTTATCGGCTGTTCAACAGG 243 155 3670 Antisense
CAGGGAAATCGTGTCTTGCAGAGTA 101 209 3691 Antisense
GAACAAATGCGTGCTTCTTCTCAAA 248 353 3735 Antisense
AATTCCCGGAACTCCGTGCAGAAAG 173 173 3761 Antisense
AATTGCCTTCGAGTAATTCATTCGG 115 177 3790 Antisense
Sequence Source Affymetrix Proprietary Database