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[178081_at] 7TM receptor, srbc family

Description M01B2.3 /REP_DB=WormBase Gene ID /WP=CE16265 /TR=O17957 /GB=CAB05561.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 01      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 17.6
(-2)
A 		1.5
(-3)
A 		12
(-2.3)
A 		97.9
(3)
A 		96
B 20.5
(2.8)
A 		18.5
(-1.5)
A 		20.6
(3)
A 		17.8
(-3)
A 		3
C 2
(-3)
A 		6.1
(-2.3)
A 		10.6
(-1.5)
A 		37.4
(3)
A 		35
avr 13.4
(-2.3) 		8.7
(-3) 		14.4
(-2.2) 		51
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 2
(-2.7)
A 		11.2
(-0.2)
A 		6.7
(-1.4)
A 		0.7
(-3)
A 		23.1
(3)
A 		16.7
(1.3)
A 		22
B 2.6
(-3)
A 		33.3
(3)
A 		10.4
(-1.5)
A 		6.6
(-2.2)
A 		12.4
(-1.1)
A 		10.1
(-1.5)
A 		31
C 1.8
(-3)
A 		8.5
(-1.9)
A 		9
(-1.9)
A 		39.5
(3)
A 		2.6
(-2.9)
A 		3.4
(-2.7)
A 		38
avr 2.1
(-3) 		17.7
(3) 		8.7
(-0.5) 		15.6
(2.2) 		12.7
(1.1) 		10.1
(0.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.4
(-0.4)
A 		0.3
(-3)
A 		3.1
(-1.8)
A 		14.3
(3)
A 		14
B 6.5
(3)
A 		4.6
(-1.2)
A 		4.8
(-0.8)
A 		3.8
(-3)
A 		3
C 0.7
(-3)
A 		1.8
(-1.8)
A 		3.7
(0.2)
A 		6.3
(3)
A 		6
avr 4.5
(-0.7) 		2.2
(-3) 		3.9
(-1.3) 		8.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-2.8)
A 		4
(0.4)
A 		1.5
(-1.9)
A 		0.2
(-3)
A 		7
(3)
A 		4.1
(0.4)
A 		7
B 0.9
(-3)
A 		11.1
(3)
A 		2.5
(-2.1)
A 		1.7
(-2.5)
A 		5.1
(-0.5)
A 		3.8
(-1.3)
A 		10
C 0.7
(-3)
A 		2.6
(-1.4)
A 		2.3
(-1.7)
A 		7.9
(3)
A 		0.9
(-2.8)
A 		1.1
(-2.7)
A 		7
avr 0.7
(-3) 		5.9
(3) 		2.1
(-1.4) 		3.3
(-0) 		4.3
(1.2) 		3
(-0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178081_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14731
Sequence Type Exemplar sequence
Representative Public ID M01B2.3 NCBI
Target Description M01B2.3 /REP_DB=WormBase Gene ID /WP=CE16265 /TR=O17957 /GB=CAB05561.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074374 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-75) (srbc-75) mRNA, complete cds. 11/11 None
M01B2.3 ENSEMBL cdna:known chromosome:CEL140:V:15256415:15257391:1 gene:M01B2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15256414-15257391(+) 96.73 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-75
Ensembl M01B2.3
Entrez Gene 187354 Entrez gene
SwissProt O17957 EMBL-EBI
WormBase CE16265 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05561 Hypothetical protein M01B2.3 [Caenorhabditis elegans] ref|NP_506775.1| Serpentine Receptor, class BC (class B-like) family member (srbc-75) [Caenorhabditis elegans] 1.0E-149
blast CAB05562 Hypothetical protein M01B2.4 [Caenorhabditis elegans] ref|NP_506774.1| Serpentine Receptor, class BC (class B-like) family member (srbc-76) [Caenorhabditis elegans] 1.0E-102
blast T25314 hypothetical protein T26E4.13 - Caenorhabditis elegans 5.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.3E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506775.1 7 10-32,45-67,82-104,125-144,178-197,217-239,254-276
M01B2.3 7 10-32,45-67,82-104,125-144,178-197,217-239,254-276
Sequence
Target Sequence 
>C. ELEGANS:178081_AT
gaggtcgttactagcacttttgatatcctttgagagagttcttgccacttattttccaat
ttatttccataagtatcgacagagatttcctaactttatagttcttttaataatcgtaac
tagtggatttttcgaccaatatacactattcggatactgtggaaatgatattgacacacc
attggaatgcaaaggtttttcatgcgctgttaacacgtgttattactcatactatttctc
gaatgagcgagttgtttgttttatgaatggagtattttcactcactttattttttcgatt
ctttgtttggaaatacgtttcaaaaactcagacaaatgagaggatatccagagccacgcg
tattgcactactcgactttttcataatgatattcttcaatatcttggcttcctacattac
cactattttcaacttgcaaaatgttggtccactgacaattgttacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTCGTTACTAGCACTTTTGATA 501 401 294 Antisense
GATATCCTTTGAGAGAGTTCTTGCC 458 425 315 Antisense
AGTTCTTGCCACTTATTTTCCAATT 624 63 330 Antisense
ATCGACAGAGATTTCCTAACTTTAT 43 37 368 Antisense
GGTTTTTCATGCGCTGTTAACACGT 667 505 487 Antisense
GTTATTACTCATACTATTTCTCGAA 507 447 512 Antisense
TTCACTCACTTTATTTTTTCGATTC 265 687 570 Antisense
TGAGAGGATATCCAGAGCCACGCGT 277 569 630 Antisense
ATATCTTGGCTTCCTACATTACCAC 51 21 692 Antisense
ACATTACCACTATTTTCAACTTGCA 226 105 707 Antisense
GTTGGTCCACTGACAATTGTTACGA 225 437 736 Antisense
Sequence Source Affymetrix Proprietary Database