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[178080_at]

Description ZC168.6 /REP_DB=WormBase Gene ID /WP=CE06572 /TR=Q23246 /GB=CAA94382.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 8.5
(-3)
A 		41.7
(1.5)
A 		20.2
(-1.4)
A 		52.8
(3)
A 		44
B 29.8
(0)
A 		49.3
(3)
A 		47.4
(2.7)
A 		9.8
(-3)
A 		40
C 12.5
(-2.6)
A 		9.5
(-2.9)
A 		8.8
(-3)
A 		59.1
(3)
A 		50
avr 16.9
(-3) 		33.5
(1.2) 		25.5
(-0.8) 		40.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 12.8
(-2.9)
A 		6.8
(-3)
A 		34.7
(-2.6)
A 		86.2
(-1.9)
A 		422.6
(3)
P 		354.2
(2)
P 		416
B 17.5
(-2.8)
A 		5
(-3)
A 		6.1
(-3)
A 		53
(-2.3)
A 		408
(3)
P 		382
(2.6)
P 		403
C 7.1
(-3)
A 		4.2
(-3)
A 		11.3
(-2.9)
A 		74.1
(-2)
A 		417.2
(3)
P 		374.2
(2.4)
P 		413
avr 12.5
(-2.9) 		5.3
(-3) 		17.4
(-2.8) 		71.1
(-2) 		415.9
(3) 		370.1
(2.3) 		411
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.1
(-3)
A 		9
(3)
A 		5.3
(-0.8)
A 		7.7
(1.7)
A 		6
B 9.5
(1.4)
A 		12.2
(3)
A 		11
(2.3)
A 		2.1
(-3)
A 		10
C 4.1
(-1.8)
A 		2.7
(-3)
A 		3.1
(-2.7)
A 		10
(3)
A 		7
avr 5.6
(-3) 		8
(3) 		6.5
(-0.8) 		6.6
(-0.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 2.4
(-3)
A 		2.4
(-3)
A 		7.6
(-2.8)
A 		21.9
(-2.1)
A 		127.5
(3)
P 		86.2
(1)
P 		125
B 6.1
(-2.8)
A 		1.7
(-3)
A 		1.5
(-3)
A 		14
(-2.5)
A 		165.8
(3)
P 		142.4
(2.1)
P 		164
C 2.6
(-2.9)
A 		1.3
(-3)
A 		2.9
(-2.9)
A 		14.9
(-2.4)
A 		135
(3)
P 		125.3
(2.6)
P 		134
avr 3.7
(-2.9) 		1.8
(-3) 		4
(-2.9) 		16.9
(-2.4) 		142.8
(3) 		118
(1.9) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10253
Sequence Type Exemplar sequence
Representative Public ID ZC168.6 NCBI
Target Description ZC168.6 /REP_DB=WormBase Gene ID /WP=CE06572 /TR=Q23246 /GB=CAA94382.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069588(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069588 NCBI Caenorhabditis elegans ZC168.6 (ZC168.6) mRNA, complete cds. 11/11 None
SNAP00000040688 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10738251:10738574:-1 11/11 None
GENEFINDER00000040694 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10738251:10738574:-1 11/11 None
ZC168.6 ENSEMBL cdna:known chromosome:CEL140:IV:10738251:10738574:-1 gene:ZC168.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10738256-10738580(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC168.6
Entrez Gene 177966 Entrez gene
SwissProt Q23246 EMBL-EBI
WormBase CE06572 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94382 Hypothetical protein ZC168.6 [Caenorhabditis elegans] ref|NP_501989.1| ZC168.6 [Caenorhabditis elegans] 3.0E-56
blast 1M1S Chain , Structure Of Wr4, A C.Elegans Msp Family Member 5.0E-55
blast CAE75432 Hypothetical protein CBG23425 [Caenorhabditis briggsae] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.2E-35
Sequence
Target Sequence 
>C. ELEGANS:178080_AT
ccaactggaaactatccggcaactggaggcaattcgacgcacaacatcacttccgaatcg
gattcccgtcttgcattcaaggtgaagtcgtcgaacaacgagcactaccgcgtccgtcca
gtttatgggttcgtggatgcaaagggaaagagcaaattggacatcaatcgtcttccaggg
ccaccaaaagaagacaaaattgtgattcaatacgcggaagtgccagccgaagagactgat
ccaatggcaccgttcaaggctggagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACTGGAAACTATCCGGCAACTG 657 275 31 Antisense
ATCCGGCAACTGGAGGCAATTCGAC 409 39 44 Antisense
GGCAATTCGACGCACAACATCACTT 169 533 58 Antisense
ATCACTTCCGAATCGGATTCCCGTC 602 21 76 Antisense
GATTCCCGTCTTGCATTCAAGGTGA 465 433 91 Antisense
GTCGTCGAACAACGAGCACTACCGC 180 473 117 Antisense
CGTCCGTCCAGTTTATGGGTTCGTG 565 237 141 Antisense
TTGGACATCAATCGTCTTCCAGGGC 456 709 187 Antisense
TTCAATACGCGGAAGTGCCAGCCGA 217 683 236 Antisense
GTGCCAGCCGAAGAGACTGATCCAA 646 477 250 Antisense
AATGGCACCGTTCAAGGCTGGAGCT 286 161 273 Antisense
Sequence Source Affymetrix Proprietary Database