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[178079_at]

Description C11E4.7 /REP_DB=WormBase Gene ID /WP=CE08107 /TR=Q93206 /GB=CAB02661.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 4.4
(-2)
A 		20.1
(3)
A 		1.2
(-3)
A 		7.5
(-1)
A 		19
B 20.4
(3)
A 		2.1
(-3)
A 		5.6
(-1.9)
A 		3
(-2.7)
A 		18
C 29.3
(3)
A 		10.5
(-1.1)
A 		1.7
(-3)
A 		6.4
(-2)
A 		28
avr 18
(3) 		10.9
(0.2) 		2.8
(-3) 		5.6
(-1.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.2
(1.9)
A 		4.6
(-2.2)
A 		3.3
(-2.7)
A 		2.5
(-3)
A 		18.2
(3)
A 		3.7
(-2.5)
A 		16
B 18.8
(0.8)
A 		4.4
(-2.6)
A 		10.3
(-1.2)
A 		3.6
(-2.8)
A 		28.2
(3)
A 		2.8
(-3)
A 		25
C 2.2
(-2.8)
A 		25.6
(3)
A 		1.5
(-3)
A 		5.8
(-1.9)
A 		8.5
(-1.3)
A 		15.9
(0.6)
A 		24
avr 12.1
(0.4) 		11.5
(0.1) 		5
(-2.6) 		4
(-3) 		18.3
(3) 		7.5
(-1.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.6
(-1.1)
A 		4.4
(3)
A 		0.3
(-3)
A 		1.1
(-1.8)
A 		4
B 6.5
(3)
A 		0.5
(-3)
A 		1.3
(-2.2)
A 		0.6
(-2.9)
A 		6
C 9.7
(3)
A 		3
(-1.4)
A 		0.6
(-3)
A 		1.1
(-2.7)
A 		9
avr 5.9
(3) 		2.6
(-0.8) 		0.7
(-3) 		0.9
(-2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.8
(-0.3)
A 		1.6
(-1.8)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		5.5
(3)
A 		0.9
(-2.6)
A 		5
B 6.5
(0.2)
A 		1.5
(-2.7)
A 		2.5
(-2.1)
A 		0.9
(-3)
A 		11.5
(3)
A 		1.1
(-2.9)
A 		11
C 0.8
(-2.7)
A 		7.8
(3)
A 		0.4
(-3)
A 		1.2
(-2.4)
A 		2.8
(-1.1)
A 		5.3
(1)
A 		7
avr 3.4
(-0.4) 		3.6
(-0.2) 		1.2
(-2.7) 		0.9
(-3) 		6.6
(3) 		2.4
(-1.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16548
Sequence Type Exemplar sequence
Representative Public ID C11E4.7 NCBI
Target Description C11E4.7 /REP_DB=WormBase Gene ID /WP=CE08107 /TR=Q93206 /GB=CAB02661.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077220 NCBI Caenorhabditis elegans C11E4.7 (C11E4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000031384 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9617167:9619025:1 10/11 None
SNAP00000031378 ENSEMBL cdna:SNAP chromosome:CEL140:X:9617827:9618386:1 9/11 None
C11E4.7 ENSEMBL cdna:known chromosome:CEL140:X:9617179:9618740:1 gene:C11E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9617178-9618740(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C11E4.7
Entrez Gene 182517 Entrez gene
SwissProt Q93206 EMBL-EBI
WormBase CE08107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02661 Hypothetical protein C11E4.7 [Caenorhabditis elegans] ref|NP_509621.1| C11E4.7 [Caenorhabditis elegans] 1.0E-180
blast CAB02661 Hypothetical protein C11E4.7 [Caenorhabditis elegans] ref|NP_509621.1| C11E4.7 [Caenorhabditis elegans] 1.0E-101
blast CAB02661 Hypothetical protein C11E4.7 [Caenorhabditis elegans] ref|NP_509621.1| C11E4.7 [Caenorhabditis elegans] 1.0E-70
Sequence
Target Sequence 
>C. ELEGANS:178079_AT
acagaccaaacatccaaagcacgtgtttaatgattggatgaattttttcagcagttttaa
tggagctgttaacttgaaactagatgatggaacaaaagggaacaacttttactatcagtt
ccatttgcaactagcacaatattaccaagacaagatgtgtatggaaggagttattcagtt
aggaaaaccgttcaaattggaggaaacttctgacgcggatcgcatgaacataatcacaac
ttctgttgcttccacgtacaaagcgatgtatgacaaagaaatagaacggttgacattgga
gaacaaaaatatggctgacaaaattagaacccagcatgctacgtcgatttacttgtttcc
tggaattgcatatggaagaaatccaagtgaagattcacccgaagtaattgatcatttgat
gttcgaaataatttacaaggggtttatggaagttacacccgaaaaagatacaaataattt
tgggaaacaagtccatggtgtgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGACCAAACATCCAAAGCACGTG 313 107 417 Antisense
GAACAACTTTTACTATCAGTTCCAT 341 353 516 Antisense
ATCAGTTCCATTTGCAACTAGCACA 504 29 530 Antisense
GCAACTAGCACAATATTACCAAGAC 25 321 543 Antisense
GAAACTTCTGACGCGGATCGCATGA 181 357 619 Antisense
CATAATCACAACTTCTGTTGCTTCC 12 215 645 Antisense
GTTGCTTCCACGTACAAAGCGATGT 335 437 661 Antisense
AGAACCCAGCATGCTACGTCGATTT 673 73 742 Antisense
TACGTCGATTTACTTGTTTCCTGGA 76 649 756 Antisense
GAAGATTCACCCGAAGTAATTGATC 61 337 805 Antisense
GGGAAACAAGTCCATGGTGTGCTCA 120 495 898 Antisense
Sequence Source Affymetrix Proprietary Database