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[178077_at]

Description F57F5.3 /REP_DB=WormBase Gene ID /WP=CE06001 /TR=Q20951 /GB=CAB00099.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_high_8_8 > 45      6grp_highest_nonorm > 43      6grp_total > 61      4grp_total > 50      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 101.4
(-2.6)
P 		487.3
(3)
P 		348.5
(1)
P 		74.5
(-3)
A 		413
B 141.5
(-2)
P 		315.7
(2.3)
P 		345.7
(3)
P 		100
(-3)
P 		246
C 132.1
(-2.1)
P 		448.3
(3)
P 		314
(0.8)
P 		77.1
(-3)
P 		371
avr 125
(-2.3) 		417.1
(3) 		336.1
(1.5) 		83.9
(-3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1691
1 2 3 4 5 6 range
A 398.6
(-2.3)
P 		424.4
(-2.2)
P 		1846.7
(3)
P 		1739.8
(2.6)
P 		772.1
(-0.9)
P 		202.6
(-3)
P 		1644
B 233.8
(-3)
P 		531.9
(-1.9)
P 		1596.3
(2.2)
P 		1819.1
(3)
P 		847
(-0.7)
P 		231
(-3)
P 		1588
C 210.5
(-3)
P 		529
(-1.9)
P 		1797.5
(2.7)
P 		1893.1
(3)
P 		736.7
(-1.1)
P 		206.7
(-3)
P 		1686
avr 281
(-2.7) 		495.1
(-1.9) 		1746.8
(2.7) 		1817.3
(3) 		785.3
(-0.9) 		213.4
(-3) 		1604
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 36.9
(-1.4)
P 		105.8
(3)
P 		91.1
(2.1)
P 		10.9
(-3)
A 		95
B 45.1
(-0.6)
P 		78
(2.8)
P 		80.1
(3)
P 		21.3
(-3)
P 		59
C 43.7
(-1.4)
P 		128.9
(3)
P 		109.4
(2)
P 		13
(-3)
P 		116
avr 41.9
(-1.2) 		104.2
(3) 		93.5
(2.3) 		15.1
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 73.5
(-2.6)
P 		150.9
(-1.4)
P 		402.2
(2.4)
P 		441.3
(3)
P 		233
(-0.2)
P 		49.3
(-3)
P 		392
B 81.3
(-3)
P 		177
(-1.6)
P 		387.6
(1.6)
P 		481.8
(3)
P 		344.1
(0.9)
P 		86.1
(-2.9)
P 		401
C 78
(-2.9)
P 		161.4
(-1.6)
P 		457.5
(3)
P 		380.7
(1.8)
P 		238.4
(-0.4)
P 		69.2
(-3)
P 		388
avr 77.6
(-2.8) 		163.1
(-1.4) 		415.8
(2.7) 		434.6
(3) 		271.8
(0.3) 		68.2
(-3) 		366
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14046
Sequence Type Exemplar sequence
Representative Public ID F57F5.3 NCBI
Target Description F57F5.3 /REP_DB=WormBase Gene ID /WP=CE06001 /TR=Q20951 /GB=CAB00099.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073611 NCBI Caenorhabditis elegans F57F5.3 (F57F5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000039450 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12007220:12009118:-1 11/11 None
F57F5.3 ENSEMBL cdna:known chromosome:CEL140:V:12007220:12009118:-1 gene:F57F5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12007219-12009118(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57F5.3
Entrez Gene 179646 Entrez gene
SwissProt Q20951 EMBL-EBI
WormBase CE06001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00099 Hypothetical protein F57F5.3 [Caenorhabditis elegans] ref|NP_506012.1| F57F5.3 [Caenorhabditis elegans] 1.0E-135
blast CAE75368 Hypothetical protein CBG23352 [Caenorhabditis briggsae] 1.0E-131
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506012.1 4 69-88,110-132,137-156,229-251
F57F5.3 4 69-88,110-132,137-156,229-251
GENEFINDER00000039450 4 69-88,110-132,137-156,229-251
Sequence
Target Sequence 
>C. ELEGANS:178077_AT
attcgtgtactctcttatgctcaaatttttttagccggtattctcctggtgactgatgtt
tccaaaaacgtacttctttggaattacatacaaatgaatggcgtcaaaattgaaatgctc
gctcatgtcatatttcccatatttgctctgatcgtcggttttatatgtctgacagctatt
ctcaatccatcaaaggcattgtctaaatgtgttgccattctgctgcttgtcattattgtg
ccaaattttatattcccaaaatattcagtttttatgaaaacagcaatagaatcagtggaa
ataagtcaagtaatggatcgaagtctttttggaaatgatattgatatgataaaatcagaa
actcataatcgaatgtcaaagattttaatgttatcaacaaatcattggccattgggagta
tctgatttaacaagtcttccaactgattttgttcttatgatgcagtatctacttattgca
tattctgtattttcattatcccttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGTGTACTCTCTTATGCTCAAA 347 9 226 Antisense
TTTTAGCCGGTATTCTCCTGGTGAC 48 675 254 Antisense
TTCTCCTGGTGACTGATGTTTCCAA 75 693 266 Antisense
CTCGCTCATGTCATATTTCCCATAT 447 233 343 Antisense
TATTTCCCATATTTGCTCTGATCGT 218 663 356 Antisense
TCTGATCGTCGGTTTTATATGTCTG 66 609 372 Antisense
GTCTGACAGCTATTCTCAATCCATC 533 471 392 Antisense
TAAATGTGTTGCCATTCTGCTGCTT 356 641 429 Antisense
TCTGCTGCTTGTCATTATTGTGCCA 395 609 444 Antisense
GCAGTATCTACTTATTGCATATTCT 698 311 687 Antisense
TTCTGTATTTTCATTATCCCTTTTT 41 695 708 Antisense
Sequence Source Affymetrix Proprietary Database