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[178076_at]

Description C14B1.3 /REP_DB=WormBase Gene ID /WP=CE00900 /TR=Q17962 /GB=CAA85486.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 75      6grp_total > 57      4grp_total > 16      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 649
1 2 3 4 range
A 757.3
(-3)
P 		949.2
(-0.8)
P 		990.3
(-0.3)
P 		1272.4
(3)
P 		515
B 812.4
(-3)
P 		1052
(0.6)
P 		1002.8
(-0.2)
P 		1215
(3)
P 		403
C 854.9
(-3)
P 		907.7
(-2.4)
P 		1049.4
(-0.9)
P 		1406.2
(3)
P 		551
avr 808.2
(-3) 		969.6
(-1) 		1014.2
(-0.5) 		1297.9
(3) 		490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 1059.6
(3)
P 		824.6
(-1.5)
P 		876.6
(-0.5)
P 		853.8
(-0.9)
P 		744.4
(-3)
P 		1029.6
(2.4)
P 		315
B 938.2
(1.3)
P 		853.4
(-0.8)
P 		943.5
(1.4)
P 		875.8
(-0.2)
P 		764.4
(-3)
P 		1006.7
(3)
P 		242
C 942.3
(0.5)
P 		705.5
(-3)
P 		933.2
(0.3)
P 		934.2
(0.4)
P 		846.2
(-0.9)
P 		1114.3
(3)
P 		409
avr 980
(1.4) 		794.5
(-2.8) 		917.8
(0) 		887.9
(-0.7) 		785
(-3) 		1050.2
(3) 		265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 275.7
(3)
P 		206
(-1.7)
P 		258.9
(1.9)
P 		186.3
(-3)
P 		89
B 259.1
(2.8)
P 		259.8
(3)
P 		232.4
(-3)
P 		258.9
(2.8)
P 		27
C 283
(-0.9)
P 		261
(-1.9)
P 		365.8
(3)
P 		237.1
(-3)
P 		129
avr 272.6
(1.7) 		242.3
(-1.5) 		285.7
(3) 		227.4
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 195.3
(-2.7)
P 		293.3
(3)
P 		190.9
(-3)
P 		216.5
(-1.5)
P 		224.6
(-1)
P 		250.7
(0.5)
P 		102
B 326.4
(1)
P 		284.1
(-0.7)
P 		229.1
(-3)
P 		232
(-2.9)
P 		310.6
(0.3)
P 		375.4
(3)
P 		146
C 349.3
(2.2)
P 		215.3
(-2.1)
P 		237.5
(-1.4)
P 		187.9
(-3)
P 		273.8
(-0.2)
P 		373
(3)
P 		185
avr 290.3
(0.9) 		264.2
(-0.4) 		219.2
(-2.6) 		212.1
(-3) 		269.7
(-0.1) 		333
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7997
Sequence Type Exemplar sequence
Representative Public ID C14B1.3 NCBI
Target Description C14B1.3 /REP_DB=WormBase Gene ID /WP=CE00900 /TR=Q17962 /GB=CAA85486.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065347 NCBI Caenorhabditis elegans C14B1.3 (C14B1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000040970 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3703634:3704934:1 11/11 None
SNAP00000040959 ENSEMBL cdna:SNAP chromosome:CEL140:III:3703658:3704934:1 11/11 None
C14B1.3 ENSEMBL cdna:known chromosome:CEL140:III:3703626:3705005:1 gene:C14B1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3703633-3704934(+) 97.84 100.0
Public Domain and Genome References
Gene Title
Ensembl C14B1.3
Entrez Gene 259498 Entrez gene
SwissProt Q17962 EMBL-EBI
WormBase CE00900 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30163 protein catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85486 Hypothetical protein C14B1.3 [Caenorhabditis elegans] ref|NP_497748.1| C14B1.3 [Caenorhabditis elegans] 0.0
blast CAE64481 Hypothetical protein CBG09205 [Caenorhabditis briggsae] 1.0E-117
blast CAG04000 unnamed protein product [Tetraodon nigroviridis] 5.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.5E-7
Pfam IPR007397 EMBL-EBI F-box associated region 1.5E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.5E-7
Pfam IPR007397 EMBL-EBI F-box associated region 1.5E-4
Sequence
Target Sequence 
>C. ELEGANS:178076_AT
gagagctcaatcagtgttttcatcgatttggtgaactctggaattgacccatggatcttg
gatcacgttcgcccgagaattagaattacacagaaagtcaatcatcgtaatgattgtgca
gccaggctctcatttgctgctcagttgaactatcacgagactcagtggattgaaagattt
ggccatgtacaaactatgagcaacactgatcataaaagatataaatctgtaaataaggaa
tgggctcaatggactggtcaaccttgggaagattggacaattgagtttgacgattacccg
tctggaattcgacatttaactattctgaatgaaggtgaagatagacaattttggagagga
ttctacggaccaaaagttgccaatattcaagtcgaagttattctgcctgatgagccaata
gttaaaccactcgctgttgattccgaaaaatgcaatgaagacgagaatcctaacgctgaa
gacgaggatgatgacgatgatgaagtaccgccaagagtcggagtttttagaatgccactc
tttcgtcgtggtcgtcacatgtatggaattcctcccgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGCTCAATCAGTGTTTTCATCG 419 395 553 Antisense
GACCCATGGATCTTGGATCACGTTC 343 381 598 Antisense
GGATCACGTTCGCCCGAGAATTAGA 238 511 612 Antisense
GTGCAGCCAGGCTCTCATTTGCTGC 216 481 668 Antisense
GGGCTCAATGGACTGGTCAACCTTG 256 491 794 Antisense
ACGATTACCCGTCTGGAATTCGACA 428 1 842 Antisense
CAAGTCGAAGTTATTCTGCCTGATG 248 183 940 Antisense
TAAACCACTCGCTGTTGATTCCGAA 635 639 975 Antisense
TTTTAGAATGCCACTCTTTCGTCGT 506 675 1077 Antisense
CTTTCGTCGTGGTCGTCACATGTAT 268 223 1092 Antisense
CACATGTATGGAATTCCTCCCGCTG 491 195 1108 Antisense
Sequence Source Affymetrix Proprietary Database