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[178075_at]

Description T27E7.6 /REP_DB=WormBase Gene ID /WP=CE16509 /TR=O45859 /GB=CAB05291.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 87      4grp_high_8_8 > 13      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 11      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 105.9
(-2.5)
P 		95
(-3)
A 		130.3
(-1.2)
P 		216
(3)
P 		121
B 101.6
(0)
P 		96.3
(-0.5)
P 		69.1
(-3)
P 		133.3
(3)
P 		64
C 125.1
(-0.7)
P 		129.3
(-0.4)
P 		87.1
(-3)
P 		184.7
(3)
P 		98
avr 110.9
(-1.9) 		106.9
(-2.2) 		95.5
(-3) 		178
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 105.1
(-3)
P 		105.9
(-3)
P 		117.2
(-2.8)
P 		183.5
(-1.5)
P 		376.8
(2.2)
P 		416.1
(3)
P 		311
B 110.6
(-2.6)
P 		78.4
(-3)
P 		98
(-2.7)
P 		189
(-1.5)
P 		293.6
(-0.1)
P 		531.1
(3)
P 		453
C 88.2
(-2.8)
P 		117.8
(-2.5)
P 		73.7
(-3)
P 		222.9
(-1.2)
P 		243.7
(-1)
P 		580.5
(3)
P 		507
avr 101.3
(-2.9) 		100.7
(-2.9) 		96.3
(-3) 		198.5
(-1.5) 		304.7
(0) 		509.2
(3) 		413
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 38.6
(3)
P 		20.6
(-3)
A 		34.1
(1.5)
P 		31.6
(0.7)
P 		18
B 32.4
(3)
P 		23.8
(-0.1)
P 		16
(-3)
P 		28.4
(1.5)
P 		16
C 41.4
(3)
P 		37.2
(0.7)
P 		30.3
(-3)
P 		31.1
(-2.6)
P 		11
avr 37.5
(3) 		27.2
(-2.8) 		26.8
(-3) 		30.4
(-1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 19.4
(-3)
P 		37.7
(-1.8)
P 		25.5
(-2.6)
P 		46.5
(-1.3)
P 		113.7
(3)
P 		101.3
(2.2)
P 		94
B 38.5
(-2.5)
P 		26.1
(-2.9)
P 		23.8
(-3)
P 		50.1
(-2.1)
P 		119.3
(0.3)
P 		198
(3)
P 		174
C 32.7
(-2.5)
P 		35.9
(-2.4)
P 		18.8
(-3)
P 		44.8
(-2.1)
P 		78.9
(-0.9)
P 		194.3
(3)
P 		176
avr 30.2
(-2.7) 		33.2
(-2.6) 		22.7
(-3) 		47.1
(-2) 		104
(0.4) 		164.5
(3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9059
Sequence Type Exemplar sequence
Representative Public ID T27E7.6 NCBI
Target Description T27E7.6 /REP_DB=WormBase Gene ID /WP=CE16509 /TR=O45859 /GB=CAB05291.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070363 NCBI Caenorhabditis elegans T27E7.6 (T27E7.6) mRNA, complete cds. 11/11 None
SNAP00000042431 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14539729:14542569:-1 11/11 None
GENEFINDER00000042439 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14539729:14542569:-1 11/11 None
T27E7.6 ENSEMBL cdna:known chromosome:CEL140:IV:14539729:14542569:-1 gene:T27E7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14539734-14542575(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E7.6
Entrez Gene 189000 Entrez gene
SwissProt O45859 EMBL-EBI
WormBase CE16509 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05291 Hypothetical protein T27E7.6 [Caenorhabditis elegans] ref|NP_502764.1| T27E7.6 [Caenorhabditis elegans] 0.0
blast CAB16502 Hypothetical protein Y57G11B.1 [Caenorhabditis elegans] emb|CAB05295.1| Hypothetical protein Y57G11B.1 [Caenorhabditis elegans] ref|NP_502766.1| Y57G11B.1 [Caenorhabditis elegans] 1.0E-89
Sequence
Target Sequence 
>C. ELEGANS:178075_AT
atgacatcaatcttctgctggcagttgaaataaaacaaaacggaagtcatcttgttgaaa
aactgatagatctttttgaatctgtcaaaactgtcaaatgtttgatggatacggttcaaa
cggagctaacaactattggcgacgaagttccagaaatcacgcctggacaactatctactt
ttgatgatatcaaacgccacaaaactctttttgacaaccgtgtcgctagattccgtaaaa
acgtggtcacttccagtttcaccgacgcaaaattatatgagatttgcatgaccacagttt
ccgactttgagaaaataatggacaaacaagatatgaaattagtctgtcatcatcttccta
aggccgttgaaaatcaagatttcaagaaaatcaaatattatgctgacatggcgagcaagt
tgaacaaccaattctctcaagaagtacagcatcttgctgccgggttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACATCAATCTTCTGCTGGCAGT 113 45 743 Antisense
GGAGCTAACAACTATTGGCGACGAA 655 519 864 Antisense
GACGAAGTTCCAGAAATCACGCCTG 269 379 883 Antisense
AATCACGCCTGGACAACTATCTACT 526 171 897 Antisense
TGATATCAAACGCCACAAAACTCTT 656 563 927 Antisense
ACAACCGTGTCGCTAGATTCCGTAA 457 111 956 Antisense
TTCCAGTTTCACCGACGCAAAATTA 38 699 993 Antisense
CATGACCACAGTTTCCGACTTTGAG 600 209 1029 Antisense
GAAATTAGTCTGTCATCATCTTCCT 520 361 1077 Antisense
GTCATCATCTTCCTAAGGCCGTTGA 260 467 1088 Antisense
TACAGCATCTTGCTGCCGGGTTTTC 612 641 1187 Antisense
Sequence Source Affymetrix Proprietary Database