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[178073_s_at]

Description F28H7.6 /REP_DB=WormBase Gene ID /WP=CE05755 /TR=Q19893 /GB=CAA96638.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 39      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 85.4
(3)
P 		3.6
(-3)
A 		4.5
(-2.9)
A 		37.3
(-0.5)
A 		82
B 73.3
(3)
P 		2
(-3)
A 		16.9
(-1.7)
A 		4.1
(-2.8)
A 		71
C 69.8
(3)
P 		21.6
(-1.2)
A 		1
(-3)
A 		21.5
(-1.2)
A 		69
avr 76.2
(3) 		9.1
(-2.9) 		7.5
(-3) 		21
(-1.8) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 13.2
(-3)
A 		63.4
(1.9)
A 		45.4
(0.1)
A 		32.9
(-1.1)
A 		15.1
(-2.8)
A 		74.8
(3)
P 		62
B 46.3
(-2.1)
A 		65.4
(3)
P 		47.4
(-1.8)
P 		49.4
(-1.2)
A 		53.5
(-0.2)
P 		42.8
(-3)
P 		23
C 54.8
(-1.2)
P 		64.3
(0)
P 		45.4
(-2.3)
A 		88.3
(3)
M 		53.4
(-1.3)
A 		40
(-3)
P 		48
avr 38.1
(-3) 		64.4
(3) 		46.1
(-1.2) 		56.9
(1.3) 		40.7
(-2.4) 		52.5
(0.3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 31.1
(3)
P 		0.8
(-3)
A 		1.2
(-2.9)
A 		5.5
(-2.1)
A 		30
B 23.4
(3)
P 		0.5
(-3)
A 		3.9
(-2.1)
A 		0.9
(-2.9)
A 		23
C 23.1
(3)
P 		6.2
(-1.5)
A 		0.4
(-3)
A 		3.6
(-2.2)
A 		23
avr 25.9
(3) 		2.5
(-2.8) 		1.8
(-3) 		3.3
(-2.6) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.4
(-3)
A 		22.5
(3)
A 		9.9
(-0.8)
A 		8.3
(-1.2)
A 		4.5
(-2.4)
A 		18.2
(1.7)
P 		20
B 16.1
(-0.3)
A 		21.8
(3)
P 		11.5
(-3)
P 		13.1
(-2.1)
A 		21.8
(3)
P 		16
(-0.4)
P 		10
C 20.3
(3)
P 		19.6
(2.5)
P 		11.6
(-3)
A 		17.7
(1.2)
M 		17.3
(0.9)
A 		13.4
(-1.8)
P 		9
avr 12.9
(-1.9) 		21.3
(3) 		11
(-3) 		13
(-1.8) 		14.5
(-1) 		15.9
(-0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178073_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13423
Sequence Type Exemplar sequence
Representative Public ID F28H7.6 NCBI
Target Description F28H7.6 /REP_DB=WormBase Gene ID /WP=CE05755 /TR=Q19893 /GB=CAA96638.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073344 NCBI Caenorhabditis elegans F28H7.6 (F28H7.6) mRNA, complete cds. 11/11 None
SNAP00000038694 ENSEMBL cdna:SNAP chromosome:CEL140:V:10757081:10759107:-1 11/11 None
GENEFINDER00000038705 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10757081:10759213:-1 11/11 None
F28H7.6 ENSEMBL cdna:known chromosome:CEL140:V:10757054:10759213:-1 gene:F28H7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10757080-10759213(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28H7.6
Entrez Gene 179491 Entrez gene
SwissProt Q19893 EMBL-EBI
WormBase CE05755 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96638 Hypothetical protein F28H7.6 [Caenorhabditis elegans] ref|NP_505745.1| F28H7.6 [Caenorhabditis elegans] 0.0
blast CAE64882 Hypothetical protein CBG09694 [Caenorhabditis briggsae] 1.0E-177
blast CAE64882 Hypothetical protein CBG09694 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505745.1 1 473-492
F28H7.6 1 473-492
SNAP00000038694 1 456-475
GENEFINDER00000038705 1 473-492
Sequence
Target Sequence 
>C. ELEGANS:178073_S_AT
ggaggttttgtatctgaagcagtcaaggatcggtattctgggtgcgaaacgtttcaagga
gatgtatatctttctgagaccagtggaaatctttccgagcggattaaggaattatcctat
gctcatacaataaacggtcaactcctaattgccaataacccatcaattacgaagttatca
tttccgtttctcaagaaaataaaatctacaaaatgccctgctcttcaaatatcaaacatg
acaaatttggagttcctcttattccagtcacatgtagagttttcctgtcgtagaagtggg
ccaattgtgatgataactaatagttcgaagctatacttacaccatcaaatgctcagacaa
ctcagaaaagtgaaggcagtcttgagacatttcgatagcaaaagcgacacatattctgaa
aaaaccacctactacttgatcggagggtgttttgtgatcgcaatcttcatggaatttatt
tggtttttccgaaaaaatcttcttcttcctaatttcctctaccgtctgttcccgatgaga
atta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTTTTGTATCTGAAGCAGTCA 320 515 1000 Antisense
GTCAAGGATCGGTATTCTGGGTGCG 63 463 1021 Antisense
GATGTATATCTTTCTGAGACCAGTG 436 409 1060 Antisense
AAACGGTCAACTCCTAATTGCCAAT 61 127 1131 Antisense
GAAGTTATCATTTCCGTTTCTCAAG 483 337 1170 Antisense
TTCCTCTTATTCCAGTCACATGTAG 73 701 1252 Antisense
GTCACATGTAGAGTTTTCCTGTCGT 393 465 1266 Antisense
TCCTGTCGTAGAAGTGGGCCAATTG 197 591 1282 Antisense
GTTCGAAGCTATACTTACACCATCA 638 441 1322 Antisense
GGGTGTTTTGTGATCGCAATCTTCA 46 499 1444 Antisense
TACCGTCTGTTCCCGATGAGAATTA 531 649 1519 Antisense
Sequence Source Affymetrix Proprietary Database