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[178072_at]

Description F35C5.1 /REP_DB=WormBase Gene ID /WP=CE15941 /TR=O45437 /GB=CAB03050.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 33      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.2
(-3)
A 		13.2
(3)
A 		11
(-1.4)
A 		11.2
(-1)
A 		3
B 3.5
(-3)
A 		9.3
(-0.3)
A 		11.2
(0.6)
A 		16.2
(3)
A 		13
C 10.4
(0.6)
A 		12.9
(3)
A 		11.7
(1.9)
A 		6.6
(-3)
A 		6
avr 8
(-3) 		11.8
(3) 		11.3
(2.2) 		11.3
(2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 9.9
(-2.7)
A 		39
(1.3)
A 		23.1
(-0.9)
A 		8
(-3)
A 		36.6
(1)
A 		50.9
(3)
A 		43
B 9.5
(-2.8)
A 		7.9
(-3)
A 		51.9
(2.3)
A 		12.5
(-2.4)
A 		21.6
(-1.3)
A 		57.4
(3)
A 		50
C 6.7
(-3)
A 		6.8
(-3)
A 		12.4
(-2.1)
A 		12.7
(-2.1)
A 		23.4
(-0.5)
A 		46.8
(3)
A 		40
avr 8.7
(-3) 		17.9
(-1.7) 		29.1
(-0.2) 		11.1
(-2.7) 		27.2
(-0.4) 		51.7
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.7
(3)
A 		2.9
(0.7)
A 		2.9
(0.7)
A 		1.6
(-3)
A 		2
B 1.1
(-3)
A 		2.3
(0.1)
A 		2.6
(0.9)
A 		3.4
(3)
A 		2
C 3.5
(1.8)
A 		3.7
(2.2)
A 		4.1
(3)
A 		1.1
(-3)
A 		3
avr 2.8
(1) 		3
(2) 		3.2
(3) 		2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.8
(-3)
A 		13.9
(3)
A 		5
(-1.4)
A 		2
(-2.9)
A 		11.1
(1.6)
A 		12.4
(2.3)
A 		12
B 3.3
(-2.8)
A 		2.6
(-3)
A 		12.6
(0.2)
A 		3.3
(-2.8)
A 		8.8
(-1)
A 		21.4
(3)
A 		19
C 2.5
(-2.8)
A 		2.1
(-3)
A 		3.2
(-2.5)
A 		2.6
(-2.8)
A 		7.6
(-0.6)
A 		15.7
(3)
A 		14
avr 2.5
(-3) 		6.2
(-1.4) 		6.9
(-1.1) 		2.6
(-3) 		9.2
(-0.1) 		16.5
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3567
Sequence Type Exemplar sequence
Representative Public ID F35C5.1 NCBI
Target Description F35C5.1 /REP_DB=WormBase Gene ID /WP=CE15941 /TR=O45437 /GB=CAB03050.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064336 NCBI Caenorhabditis elegans F35C5.1 (F35C5.1) mRNA, complete cds. 11/11 None
F35C5.1 ENSEMBL cdna:known chromosome:CEL140:II:12880712:12881838:1 gene:F35C5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007543 8/11 Cross Hyb Matching Probes None
GENEFINDER00000007558 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12880708-12881835(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35C5.1
Entrez Gene 185261 Entrez gene
SwissProt O45437 EMBL-EBI
WormBase CE35520 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03050 Hypothetical protein F35C5.1 [Caenorhabditis elegans] ref|NP_496737.2| F35C5.1 [Caenorhabditis elegans] 9.0E-91
blast CAA92621 Hypothetical protein W01B6.8 [Caenorhabditis elegans] ref|NP_501828.1| W01B6.8 [Caenorhabditis elegans] 4.0E-31
blast CAE71483 Hypothetical protein CBG18402 [Caenorhabditis briggsae] 9.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496737.2 1 5-27
F35C5.1 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:178072_AT
atcaatggttctattcctgttctggccgttaatcttggtgctctctgttctcacagtctg
tgtctcgaaaaaatcacagaaaagaatcgattcgctgaaagtgccacgtcgtccaccgca
ggcgtcaagcatgtcgagttcaggaaaatcgtaccgaaaatccggtaatcaggtttcggt
gagaggttcgcagaagtctgacacaacggattcggcaaaaaccgagcttatcgagatgcc
acttggcaaggccgccagagacgagcccaaacacaacattctgacacctgcggccgaaca
aaagacgggtgactcgtcgccaccgtccaagcgggttcagttcgcgcacccgttgaagcg
tgtcaagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATGGTTCTATTCCTGTTCTGG 475 25 33 Antisense
TTCTGGCCGTTAATCTTGGTGCTCT 382 693 52 Antisense
CTCTGTTCTCACAGTCTGTGTCTCG 333 231 75 Antisense
GATTCGCTGAAAGTGCCACGTCGTC 277 429 121 Antisense
ACCGCAGGCGTCAAGCATGTCGAGT 282 89 147 Antisense
AAGTCTGACACAACGGATTCGGCAA 273 155 226 Antisense
CGAGCTTATCGAGATGCCACTTGGC 695 243 255 Antisense
CCACTTGGCAAGGCCGCCAGAGACG 505 271 271 Antisense
AAACACAACATTCTGACACCTGCGG 92 127 301 Antisense
CAAAAGACGGGTGACTCGTCGCCAC 167 189 331 Antisense
CGCACCCGTTGAAGCGTGTCAAGCG 281 231 377 Antisense
Sequence Source Affymetrix Proprietary Database