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[178071_at]

Description F56D5.2 /REP_DB=WormBase Gene ID /WP=CE05968 /TR=Q20879 /GB=CAA93498.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 13      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 26
(-1.3)
A 		6.2
(-3)
A 		8
(-2.8)
A 		75.4
(3)
P 		69
B 28.1
(0.2)
A 		6.8
(-2.9)
A 		6.3
(-3)
A 		46.7
(3)
A 		40
C 43
(1.1)
A 		34.9
(0.1)
A 		9.7
(-3)
A 		58.3
(3)
P 		49
avr 32.4
(-0.2) 		16
(-2.1) 		8
(-3) 		60.1
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 3.5
(-3)
A 		6.8
(-2.6)
A 		37.7
(1.2)
A 		9.2
(-2.3)
A 		40.5
(1.5)
A 		52.3
(3)
A 		49
B 17
(-1.8)
A 		6.5
(-2.9)
A 		5.2
(-3)
A 		32.5
(-0.2)
A 		7.1
(-2.8)
A 		64.5
(3)
P 		59
C 4.8
(-3)
A 		22.1
(-1.2)
A 		4.8
(-3)
A 		46.4
(1.4)
A 		16
(-1.8)
A 		61.2
(3)
P 		56
avr 8.4
(-3) 		11.8
(-2.6) 		15.9
(-2.1) 		29.4
(-0.5) 		21.2
(-1.5) 		59.3
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.5
(2.1)
A 		1.3
(-3)
A 		2.1
(-2.5)
A 		11
(3)
P 		10
B 9
(2.3)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		10
(3)
A 		9
C 14.2
(3)
A 		10
(0.7)
A 		3.4
(-3)
A 		9.8
(0.6)
P 		11
avr 10.9
(3) 		4.3
(-1.6) 		2.3
(-3) 		10.3
(2.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.4
(-2.1)
A 		8.2
(0.8)
A 		2.3
(-2.2)
A 		12.2
(2.8)
A 		12.7
(3)
A 		12
B 5.9
(-1.8)
A 		2.2
(-2.8)
A 		1.3
(-3)
A 		8.6
(-1.1)
A 		2.9
(-2.6)
A 		24
(3)
P 		23
C 1.8
(-2.8)
A 		6.7
(-1.3)
A 		1.2
(-3)
A 		9.3
(-0.5)
A 		5.2
(-1.8)
A 		20.5
(3)
P 		19
avr 2.8
(-3) 		3.8
(-2.6) 		3.6
(-2.7) 		6.7
(-1.6) 		6.8
(-1.5) 		19.1
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9866
Sequence Type Exemplar sequence
Representative Public ID F56D5.2 NCBI
Target Description F56D5.2 /REP_DB=WormBase Gene ID /WP=CE05968 /TR=Q20879 /GB=CAA93498.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069255 NCBI Caenorhabditis elegans F56D5.2 (F56D5.2) mRNA, complete cds. 11/11 None
SNAP00000006177 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9396897:9398564:-1 10/11 None
GENEFINDER00000006192 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9396897:9398564:-1 11/11 None
F56D5.2 ENSEMBL cdna:known chromosome:CEL140:IV:9396897:9398729:-1 gene:F56D5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9396902-9398735(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D5.2
Entrez Gene 186381 Entrez gene
SwissProt Q20879 EMBL-EBI
WormBase CE05968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93498 Hypothetical protein F56D5.2 [Caenorhabditis elegans] ref|NP_501656.1| F56D5.2 [Caenorhabditis elegans] 0.0
blast CAA93498 Hypothetical protein F56D5.2 [Caenorhabditis elegans] ref|NP_501656.1| F56D5.2 [Caenorhabditis elegans] 1.0E-172
blast CAE67030 Hypothetical protein CBG12432 [Caenorhabditis briggsae] 1.0E-128
blast CAE67030 Hypothetical protein CBG12432 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:178071_AT
gaaatatgcgcatctgttgagcccgactgaaaaagagtatgttcgatcggaagatgaaag
attggagattgatgcatcggctgaaaagtattgcccacagcttttgagtcaaattaatta
cttcagaactttgatctacatcattgcttgttcgttcgaaggattgcttgagacattttt
tgtatcaattcaccaagatagatgcgatattcgtcaaaaagaaatcaaagttatcattca
aaaacttcctcctcaatatctctttgcaaaggacactttggaattctcgcatcgaactga
gaatcttttgaagcatccaccaaaaaacgctagaagctttcctatgaaggcaattcagga
gaattcagaagattctaaaaagagggaatcactcaagaaccttgctcacagcaaaaagtc
gacaaaagcgacatctagtaagtactataacggaagaaatggcggggaaaaaggatcaat
ggagagatctcaaagaagtttgaaatcagatgggactcaaccttcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATATGCGCATCTGTTGAGCCCG 97 363 708 Antisense
GCATCTGTTGAGCCCGACTGAAAAA 212 309 717 Antisense
GTATTGCCCACAGCTTTTGAGTCAA 342 453 795 Antisense
GATCTACATCATTGCTTGTTCGTTC 674 419 840 Antisense
TATCATTCAAAAACTTCCTCCTCAA 588 659 939 Antisense
TTCCTCCTCAATATCTCTTTGCAAA 383 699 953 Antisense
AGGACACTTTGGAATTCTCGCATCG 418 55 977 Antisense
GAGAATCTTTTGAAGCATCCACCAA 269 391 1006 Antisense
AACGCTAGAAGCTTTCCTATGAAGG 359 145 1033 Antisense
GAATCACTCAAGAACCTTGCTCACA 695 327 1093 Antisense
ATCAGATGGGACTCAACCTTCTTCT 683 27 1212 Antisense
Sequence Source Affymetrix Proprietary Database