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[178070_at]

Description C14B1.2 /REP_DB=WormBase Gene ID /WP=CE00899 /TR=Q17961 /GB=CAA85485.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 97      4grp_total > 25      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 44.4
(-3)
A 		107.1
(-0.6)
A 		119
(-0.2)
P 		202.9
(3)
P 		159
B 43.8
(-3)
A 		122.7
(1)
P 		99.1
(-0.2)
M 		163.6
(3)
P 		120
C 67
(-3)
A 		110.1
(0.8)
M 		134.5
(2.9)
P 		135.2
(3)
P 		68
avr 51.7
(-3) 		113.3
(0.2) 		117.5
(0.4) 		167.2
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1812
1 2 3 4 5 6 range
A 77.7
(-3)
P 		76.4
(-3)
A 		212.3
(-2.4)
P 		336.6
(-1.8)
P 		964.9
(1.1)
P 		1377.9
(3)
P 		1302
B 40.6
(-3)
A 		82
(-2.8)
A 		202.2
(-2.3)
P 		404
(-1.5)
P 		1001.1
(0.9)
P 		1530.2
(3)
P 		1490
C 87
(-3)
A 		75.5
(-3)
P 		177.7
(-2.7)
P 		433.5
(-1.8)
P 		809.7
(-0.5)
P 		1853
(3)
P 		1778
avr 68.4
(-3) 		78
(-3) 		197.4
(-2.5) 		391.4
(-1.7) 		925.2
(0.4) 		1587
(3) 		1519
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 16.2
(-3)
A 		23.3
(-0.1)
A 		31.1
(3)
P 		29.7
(2.4)
P 		15
B 14
(-3)
A 		30.3
(1.7)
P 		23
(-0.4)
M 		34.9
(3)
P 		21
C 22.2
(-3)
A 		31.6
(-0.7)
M 		46.9
(3)
P 		22.8
(-2.9)
P 		25
avr 17.5
(-3) 		28.4
(1) 		33.7
(3) 		29.1
(1.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 606
1 2 3 4 5 6 range
A 14.3
(-3)
P 		27.2
(-2.8)
A 		46.2
(-2.4)
P 		85.4
(-1.7)
P 		291.2
(2.2)
P 		335.5
(3)
P 		321
B 14.1
(-3)
A 		27.3
(-2.9)
A 		49.1
(-2.6)
P 		107
(-2)
P 		406.7
(1.2)
P 		570.6
(3)
P 		557
C 32.2
(-2.9)
A 		23
(-3)
P 		45.2
(-2.8)
P 		87.2
(-2.4)
P 		262
(-0.6)
P 		620.3
(3)
P 		597
avr 20.2
(-3) 		25.8
(-2.9) 		46.8
(-2.7) 		93.2
(-2.1) 		320
(0.7) 		508.8
(3) 		489
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7899
Sequence Type Exemplar sequence
Representative Public ID C14B1.2 NCBI
Target Description C14B1.2 /REP_DB=WormBase Gene ID /WP=CE00899 /TR=Q17961 /GB=CAA85485.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065346 NCBI Caenorhabditis elegans C14B1.2 (C14B1.2) mRNA, complete cds. 11/11 None
SNAP00000040958 ENSEMBL cdna:SNAP chromosome:CEL140:III:3702305:3703048:1 11/11 None
GENEFINDER00000040974 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3702305:3703048:1 11/11 None
C14B1.2 ENSEMBL cdna:known chromosome:CEL140:III:3702305:3703087:1 gene:C14B1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3702304-3703048(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14B1.2
Entrez Gene 175473 Entrez gene
SwissProt Q17961 EMBL-EBI
WormBase CE00899 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85485 Hypothetical protein C14B1.2 [Caenorhabditis elegans] ref|NP_497747.1| C14B1.2 [Caenorhabditis elegans] 1.0E-107
blast CAE64480 Hypothetical protein CBG09204 [Caenorhabditis briggsae] 7.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497747.1 1 96-118
C14B1.2 1 96-118
SNAP00000040958 1 96-118
GENEFINDER00000040974 1 96-118
Sequence
Target Sequence 
>C. ELEGANS:178070_AT
aaatcccactaatcctgttgctggttgtttcaattcaatgtttctatgtgagaaaccaga
ctgaagactcgatggcagaaggattacgttcgaaggataatagtatcgaattgttcggtc
aacgcgtggaggtgccgtcgtggttgaatacggcagctgagaaaacaagaggaatgtttg
actctgtgacaggtcttttcggaaagagtacagccacgtcgcgcagatcgtcggacggct
tgatgacaaatctgaagaaggatgaggcgacaaggatttggtttgcagtctatctcaaca
tcattctcgttgctctgatttacgttttcatcacgattaagctggcactcatgtcactga
gcgaaggaaaaactgagcgcaagaaacggaacaccttcagttcacacgttgcctacgatt
cccccgactataatgtcccattgaccagtattgcaacaagagagattccaagaggtcccg
ttcaagatgaagatttcgagatggctttggaagtccgagaggatgagcaaatcgccattc
cgaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCCCACTAATCCTGTTGCTGGT 170 111 17 Antisense
TCGGTCAACGCGTGGAGGTGCCGTC 506 599 131 Antisense
TCGGAAAGAGTACAGCCACGTCGCG 404 605 215 Antisense
TCGCGCAGATCGTCGGACGGCTTGA 401 599 235 Antisense
CAGTCTATCTCAACATCATTCTCGT 671 207 302 Antisense
CATTCTCGTTGCTCTGATTTACGTT 48 217 318 Antisense
ACGATTAAGCTGGCACTCATGTCAC 107 93 349 Antisense
TCAGTTCACACGTTGCCTACGATTC 95 623 413 Antisense
TCCCCCGACTATAATGTCCCATTGA 233 597 436 Antisense
GAGAGATTCCAAGAGGTCCCGTTCA 248 393 476 Antisense
GATGAGCAAATCGCCATTCCGAACC 299 411 538 Antisense
Sequence Source Affymetrix Proprietary Database