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[178069_s_at]

Description ZC247.1 /REP_DB=WormBase Gene ID /WP=CE19306 /TR=Q94378 /GB=CAB02312.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 67      6grp_total > 45      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2881
1 2 3 4 range
A 2346.8
(-0.9)
P 		1757.7
(-2.2)
P 		1367.7
(-3)
P 		4212.1
(3)
P 		2844
B 2275.6
(-0.8)
P 		1744.7
(-2)
P 		1330.7
(-3)
P 		3882.8
(3)
P 		2552
C 2055.1
(-1.2)
P 		1477.5
(-2.6)
P 		1335.3
(-3)
P 		3740.3
(3)
P 		2405
avr 2225.8
(-1) 		1660
(-2.3) 		1344.6
(-3) 		3945.1
(3) 		2601

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1614
1 2 3 4 5 6 range
A 1855.3
(-0.6)
P 		2717
(3)
P 		1685.7
(-1.3)
P 		1273.7
(-3)
P 		1707.9
(-1.2)
P 		2023.5
(0.1)
P 		1443
B 2209.6
(3)
P 		1874.7
(0.4)
P 		1777.1
(-0.3)
P 		1744.5
(-0.6)
P 		1425.5
(-3)
P 		2032.5
(1.6)
P 		784
C 1634.9
(-0.5)
P 		2392.9
(3)
P 		2311.7
(2.6)
P 		1521.8
(-1.1)
P 		1103.3
(-3)
P 		1850.7
(0.5)
P 		1290
avr 1899.9
(0.2) 		2328.2
(3) 		1924.8
(0.4) 		1513.3
(-2.3) 		1412.2
(-3) 		1968.9
(0.6) 		916
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 546
1 2 3 4 range
A 854.5
(3)
P 		381.5
(-2.7)
P 		357.5
(-3)
P 		616.6
(0.1)
P 		497
B 725.7
(1.8)
P 		430.9
(-1.6)
P 		308.4
(-3)
P 		827.4
(3)
P 		519
C 680.3
(3)
P 		424.8
(-3)
P 		465.4
(-2)
P 		630.7
(1.8)
P 		256
avr 753.5
(3) 		412.4
(-2.4) 		377.1
(-3) 		691.6
(2) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 342
(-2.8)
P 		966.3
(3)
P 		367.1
(-2.6)
P 		323
(-3)
P 		515.4
(-1.2)
P 		492.7
(-1.4)
P 		643
B 768.8
(3)
P 		624
(0.4)
P 		431.5
(-3)
P 		462.1
(-2.5)
P 		579.2
(-0.4)
P 		757.9
(2.8)
P 		337
C 606
(1.2)
P 		730.1
(3)
P 		588.4
(1)
P 		306
(-3)
P 		357
(-2.3)
P 		619.5
(1.4)
P 		424
avr 572.3
(0.1) 		773.5
(3) 		462.3
(-1.6) 		363.7
(-3) 		483.9
(-1.2) 		623.4
(0.8) 		410
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178069_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1260
Sequence Type Exemplar sequence
Representative Public ID ZC247.1 NCBI
Target Description ZC247.1 /REP_DB=WormBase Gene ID /WP=CE19306 /TR=Q94378 /GB=CAB02312.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060297 NCBI Caenorhabditis elegans ZC247.1 (ZC247.1) mRNA, complete cds. 11/11 A 
ZC247.1 ENSEMBL cdna:known chromosome:CEL140:I:10272440:10279640:-1 gene:ZC247.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10272517-10279571(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC247.1
Entrez Gene 172895 Entrez gene
SwissProt Q94378 EMBL-EBI
WormBase CE19306 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02312 Hypothetical protein ZC247.1 [Caenorhabditis elegans] ref|NP_492698.1| ZC247.1 [Caenorhabditis elegans] 0.0
blast CAE73801 Hypothetical protein CBG21351 [Caenorhabditis briggsae] 0.0
blast CAE73787 Hypothetical protein CBG21337 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.0E-33
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.6E-28
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.6E-28
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.5E-27
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.6E-28
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.0E-33
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.0E-33
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.5E-27
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 9.6E-33
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.1E-31
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.1E-27
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.6E-27
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.6E-27
Sequence
Target Sequence 
>C. ELEGANS:178069_S_AT
tagatcacctattcaagcagttgctaggcacgttcattccttcccaagtacttcacatca
atctgcaagtacaacatgtagatggacaacatttgatgatccagcacttcaagttcatca
tcccatctatccaccttcgcaaagcctttataaatcaacacccaaaactgaaagagcttc
ttatcttactaatggagaaagctcgactcaaactcaacgcaatggagctgcaaattgtca
caatggcaatggagcaactcgaagttacggaaaagttcgtgagattcatgctcacgatcg
cacagaagttttacgagacactgaagtacgacatcatcgtcgtgaagacgttttcactgt
aggcacaccgtttgtcatgggacgggttgaagccgatgaaagaggaaatgaatatctcag
atataatcgccatgaagaactaccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGATCACCTATTCAAGCAGTTGCT 224 653 6141 Antisense
CAGTTGCTAGGCACGTTCATTCCTT 121 207 6158 Antisense
TCCTTCCCAAGTACTTCACATCAAT 698 591 6178 Antisense
GATCCAGCACTTCAAGTTCATCATC 43 417 6238 Antisense
TCCACCTTCGCAAAGCCTTTATAAA 28 589 6270 Antisense
GAAAGCTCGACTCAAACTCAACGCA 272 357 6337 Antisense
GATTCATGCTCACGATCGCACAGAA 317 431 6423 Antisense
GAGACACTGAAGTACGACATCATCG 151 393 6455 Antisense
AAGACGTTTTCACTGTAGGCACACC 518 153 6485 Antisense
TAGGCACACCGTTTGTCATGGGACG 689 653 6500 Antisense
ATAATCGCCATGAAGAACTACCAAT 191 25 6563 Antisense
Sequence Source Affymetrix Proprietary Database