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[178068_s_at]

Description C34E7.4 /REP_DB=WormBase Gene ID /WP=CE03061 /TR=Q17674 /GB=CAA91790.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 80      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 55      6grp_total > 92      4grp_total > 57      6grp_high1_sub > 02_03_04_05      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3747
1 2 3 4 range
A 1287
(-1.8)
P 		3436.9
(1.7)
P 		4229.1
(3)
P 		525.2
(-3)
P 		3704
B 1272.7
(-1.8)
P 		3195.9
(1.6)
P 		4004
(3)
P 		583
(-3)
P 		3421
C 1244.3
(-1.6)
P 		3349.8
(2.4)
P 		3692.6
(3)
P 		481.8
(-3)
P 		3211
avr 1268
(-1.7) 		3327.5
(1.9) 		3975.2
(3) 		530
(-3) 		3445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1390
1 2 3 4 5 6 range
A 1628.1
(-0.4)
P 		1583.1
(-0.7)
P 		1360.3
(-1.7)
P 		1486
(-1.1)
P 		2346.4
(3)
P 		1097.1
(-3)
P 		1249
B 1306.1
(-0.9)
P 		1740.6
(1.8)
P 		1933.5
(3)
P 		1752.7
(1.9)
P 		1920.8
(2.9)
P 		979.1
(-3)
P 		954
C 1649.5
(0.8)
P 		1727.2
(1.2)
P 		1674.5
(0.9)
P 		1980.5
(2.6)
P 		2063.3
(3)
P 		956.5
(-3)
P 		1107
avr 1527.9
(-0.2) 		1683.6
(0.7) 		1656.1
(0.5) 		1739.7
(1) 		2110.2
(3) 		1010.9
(-3) 		1099
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1210
1 2 3 4 range
A 468.6
(-0.7)
P 		746.1
(0.9)
P 		1105.6
(3)
P 		76.9
(-3)
P 		1029
B 405.8
(-0.9)
P 		789.3
(2)
P 		927.8
(3)
P 		124.2
(-3)
P 		804
C 411.9
(-1.4)
P 		963.1
(1.4)
P 		1287
(3)
P 		81.2
(-3)
P 		1206
avr 428.8
(-1) 		832.8
(1.4) 		1106.8
(3) 		94.1
(-3) 		1013

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 300.1
(-2.6)
P 		563
(1)
P 		296.2
(-2.6)
P 		376.9
(-1.5)
P 		708
(3)
P 		267.1
(-3)
P 		441
B 454.5
(-1.7)
P 		579.4
(0.1)
P 		469.5
(-1.5)
P 		464.2
(-1.6)
P 		780.4
(3)
P 		365.1
(-3)
P 		415
C 611.4
(2)
P 		527
(0.6)
P 		426.2
(-1.2)
P 		398.3
(-1.7)
P 		667.6
(3)
P 		320.2
(-3)
P 		347
avr 455.3
(-0.9) 		556.5
(0.6) 		397.3
(-1.8) 		413.1
(-1.6) 		718.7
(3) 		317.5
(-3) 		401
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178068_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17622
Sequence Type Exemplar sequence
Representative Public ID C34E7.4 NCBI
Target Description C34E7.4 /REP_DB=WormBase Gene ID /WP=CE03061 /TR=Q17674 /GB=CAA91790.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077748(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077748 NCBI Caenorhabditis elegans C34E7.4 (C34E7.4) mRNA, complete cds. 11/11 None
SNAP00000036179 ENSEMBL cdna:SNAP chromosome:CEL140:X:12932429:12933559:-1 11/11 None
GENEFINDER00000036180 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12932429:12933559:-1 11/11 None
C34E7.4 ENSEMBL cdna:known chromosome:CEL140:X:12932187:12934896:-1 gene:C34E7.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12932428-12934814(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34E7.4
Entrez Gene 181426 Entrez gene
SwissProt Q17674 EMBL-EBI
WormBase CE03061 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91795 Hypothetical protein C34E7.4 [Caenorhabditis elegans] emb|CAA91790.1| Hypothetical protein C34E7.4 [Caenorhabditis elegans] ref|NP_510149.1| C34E7.4 [Caenorhabditis elegans] 1.0E-134
blast CAE70368 Hypothetical protein CBG16927 [Caenorhabditis briggsae] 1.0E-128
blast CAA91795 Hypothetical protein C34E7.4 [Caenorhabditis elegans] emb|CAA91790.1| Hypothetical protein C34E7.4 [Caenorhabditis elegans] ref|NP_510149.1| C34E7.4 [Caenorhabditis elegans] 1.0E-122
blast CAE70368 Hypothetical protein CBG16927 [Caenorhabditis briggsae] 1.0E-117
blast CAE70367 Hypothetical protein CBG16926 [Caenorhabditis briggsae] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:178068_S_AT
agattctttgctcatcaagttcccatcatacaaaaccgccggagttcaattccacgaaga
aattggagagaatggacacaaatgcttcagaatgtccggtggcaaagttgaggtttatgc
cccaggactaaatggctccaagaaatactatgtgcatcttgagacaagaatcggaatcca
cggaaagccagaacgatgcgtaaatgctgatgctaatgggtgtggaggaatcggatcatg
tgttcactgcgacatctgtcacactatgggaggatctctcaagaactttgttcaaatctt
ccaagccgataagccagctcaatgctctaccacgggactctcggcaggatcatacagcga
cttgtccctccgcgtgtgccttccaaccaaaaacgaacttctcccattcctcgatcaaaa
cgcctctcgtgccgagcagctctgggatctctttgtcagctcccgtgctcgttccggtga
gatcccacttgtcattgccgcccgtcttttcgatagaccaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTCTTTGCTCATCAAGTTCCCA 365 65 135 Antisense
GTTCCCATCATACAAAACCGCCGGA 257 439 153 Antisense
ACCGCCGGAGTTCAATTCCACGAAG 599 83 169 Antisense
AAGTTGAGGTTTATGCCCCAGGACT 525 155 239 Antisense
GGAATCGGATCATGTGTTCACTGCG 262 533 361 Antisense
TTCACTGCGACATCTGTCACACTAT 529 687 377 Antisense
AAATCTTCCAAGCCGATAAGCCAGC 638 111 428 Antisense
GATAAGCCAGCTCAATGCTCTACCA 300 423 442 Antisense
GCAGGATCATACAGCGACTTGTCCC 595 311 478 Antisense
CAGCTCTGGGATCTCTTTGTCAGCT 707 203 571 Antisense
CGCCCGTCTTTTCGATAGACCAATC 237 255 633 Antisense
Sequence Source Affymetrix Proprietary Database