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[178067_at]

Description F48F7.7 /REP_DB=WormBase Gene ID /WP=CE05894 /TR=Q20577 /GB=CAA93495.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 108.2
(-2.8)
P 		179
(2.8)
P 		105.8
(-3)
A 		180.9
(3)
A 		75
B 85.7
(-1.7)
A 		137.4
(2)
P 		151.5
(3)
P 		67.8
(-3)
A 		84
C 113.5
(-2.2)
A 		102.1
(-3)
A 		154.6
(0.9)
P 		183.3
(3)
A 		81
avr 102.5
(-3) 		139.5
(2.3) 		137.3
(2) 		144
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 110.9
(2)
A 		123.1
(3)
P 		107.3
(1.7)
A 		47.5
(-3)
A 		60.5
(-2)
A 		85.8
(0)
A 		76
B 97.3
(-0.8)
A 		153.6
(3)
A 		65.6
(-3)
A 		90.3
(-1.3)
A 		66
(-3)
A 		73.6
(-2.5)
A 		88
C 51.7
(-3)
A 		116.6
(3)
A 		56.2
(-2.6)
A 		75.6
(-0.8)
A 		59.4
(-2.3)
A 		77.9
(-0.6)
A 		65
avr 86.6
(-0.9) 		131.1
(3) 		76.4
(-1.7) 		71.1
(-2.2) 		62
(-3) 		79.1
(-1.5) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 39.4
(3)
P 		38.9
(2.8)
P 		27.7
(-2.4)
A 		26.5
(-3)
A 		13
B 27.3
(0.7)
A 		33.9
(2.7)
P 		35.1
(3)
P 		14.4
(-3)
A 		21
C 37.6
(-1)
A 		29.4
(-3)
A 		53.9
(3)
P 		30.9
(-2.6)
A 		25
avr 34.8
(1.4) 		34.1
(1.1) 		38.9
(3) 		23.9
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 20.4
(-1.4)
A 		43.8
(3)
P 		23.4
(-0.9)
A 		12.1
(-3)
A 		18.2
(-1.8)
A 		20.9
(-1.3)
A 		32
B 33.9
(0.1)
A 		51.1
(3)
A 		15.9
(-3)
A 		23.9
(-1.6)
A 		26.8
(-1.1)
A 		27.4
(-1)
A 		35
C 19.1
(-1.6)
A 		35.6
(3)
A 		14.3
(-3)
A 		15.2
(-2.7)
A 		19.2
(-1.6)
A 		26.1
(0.3)
A 		21
avr 24.5
(-1.3) 		43.5
(3) 		17.9
(-2.8) 		17.1
(-3) 		21.4
(-2) 		24.8
(-1.3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17621
Sequence Type Exemplar sequence
Representative Public ID F48F7.7 NCBI
Target Description F48F7.7 /REP_DB=WormBase Gene ID /WP=CE05894 /TR=Q20577 /GB=CAA93495.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077927 NCBI Caenorhabditis elegans F48F7.7 (F48F7.7) mRNA, complete cds. 11/11 None
GENEFINDER00000000621 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13979052:13980433:-1 9/11 None
SNAP00000000618 ENSEMBL cdna:SNAP chromosome:CEL140:X:13979160:13980426:-1 11/11 None
F48F7.7 ENSEMBL cdna:known chromosome:CEL140:X:13979160:13980426:-1 gene:F48F7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13979159-13980426(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48F7.7
Entrez Gene 185991 Entrez gene
SwissProt Q20577 EMBL-EBI
WormBase CE35548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93495 Hypothetical protein F48F7.7 [Caenorhabditis elegans] ref|NP_510328.2| F48F7.7 [Caenorhabditis elegans] 0.0
blast CAA93495 Hypothetical protein F48F7.7 [Caenorhabditis elegans] ref|NP_510328.2| F48F7.7 [Caenorhabditis elegans] 1.0E-177
blast CAE63056 Hypothetical protein CBG07332 [Caenorhabditis briggsae] 1.0E-122
blast CAE63056 Hypothetical protein CBG07332 [Caenorhabditis briggsae] 1.0E-115
blast CAE57953 Hypothetical protein CBG01012 [Caenorhabditis briggsae] 4.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 1.7E-44
Pfam IPR000698 EMBL-EBI Arrestin 3.3E-57
Pfam IPR000698 EMBL-EBI Arrestin 9.3E-34
Pfam IPR000698 EMBL-EBI Arrestin 3.3E-57
Sequence
Target Sequence 
>C. ELEGANS:178067_AT
tgacttgaatcatcttccgttgggaaatgttcctagaatgatgaaggatgtgaaggacat
tgggcaaatatttaaaaaaggaatagtaacaataactgtaactatccccaaagcaggata
tgctcctggagaatacctgccaatcacaatcgacattgacaatgcttccaaacgtgcagc
aacgtttgtgcgagctgaacttcatcagcactcgcattacaatgctagcaaaaaccatgg
cctcttatgcactcattcgtcttaccacgaacatcacaaggatgaaagcaaacgtattgc
agaagctcgaaaaagcataaaaattgctccaaaaaccgctggccgtgaaatgctgcggat
gaaaatcccaaagtcgccaccaacatttacaagtcccattatcagcattgagtattgtct
ttctgtgaggttggacactttaacaacccttaataatacattgcactgcgagtttgatat
catcatcggcacagtgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTTGAATCATCTTCCGTTGGGA 200 571 378 Antisense
GAATACCTGCCAATCACAATCGACA 81 327 508 Antisense
GCAACGTTTGTGCGAGCTGAACTTC 201 321 556 Antisense
GAACTTCATCAGCACTCGCATTACA 282 351 574 Antisense
CAAAAACCATGGCCTCTTATGCACT 566 189 606 Antisense
TCTTATGCACTCATTCGTCTTACCA 128 617 620 Antisense
AAACCGCTGGCCGTGAAATGCTGCG 622 125 710 Antisense
GGATGAAAATCCCAAAGTCGCCACC 442 511 734 Antisense
GCCACCAACATTTACAAGTCCCATT 335 279 753 Antisense
GAGTATTGTCTTTCTGTGAGGTTGG 441 399 787 Antisense
TGATATCATCATCGGCACAGTGCCA 183 563 852 Antisense
Sequence Source Affymetrix Proprietary Database