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[178066_at]

Description F38H4.2 /REP_DB=WormBase Gene ID /WP=CE10060 /TR=Q20182 /GB=CAB01176.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 27.2
(-0.9)
A 		5.8
(-3)
A 		28
(-0.9)
A 		67.8
(3)
A 		62
B 40.7
(2.8)
A 		41.7
(3)
A 		19.4
(-1.3)
A 		10.5
(-3)
A 		31
C 3.1
(-3)
A 		4.3
(-2.9)
A 		31.7
(-1.2)
A 		99.8
(3)
P 		97
avr 23.7
(-2.1) 		17.3
(-3) 		26.4
(-1.7) 		59.4
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 36.4
(0.4)
A 		24.7
(-0.8)
A 		39.7
(0.7)
A 		2.7
(-3)
A 		30.3
(-0.2)
A 		62.5
(3)
A 		60
B 5.3
(-3)
A 		10.7
(-2.5)
A 		15.1
(-2.1)
A 		16.6
(-2)
A 		28.6
(-0.8)
A 		70.1
(3)
P 		65
C 10.4
(-3)
A 		40.8
(2.4)
A 		33.8
(1.2)
A 		16.5
(-1.9)
A 		20.2
(-1.2)
A 		43.9
(3)
P 		34
avr 17.4
(-2.3) 		25.4
(-1.3) 		29.5
(-0.7) 		11.9
(-3) 		26.4
(-1.1) 		58.8
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.9
(3)
A 		1.3
(-3)
A 		7.3
(1.2)
A 		9.9
(3)
A 		9
B 13
(3)
A 		10.3
(1.5)
A 		4.5
(-1.7)
A 		2.2
(-3)
A 		11
C 1
(-3)
A 		1.2
(-2.9)
A 		11
(0.8)
A 		16.8
(3)
P 		16
avr 8
(1.2) 		4.3
(-3) 		7.6
(0.7) 		9.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6.7
(-0.5)
A 		8.8
(0.4)
A 		8.7
(0.3)
A 		0.7
(-3)
A 		9.1
(0.5)
A 		15.2
(3)
A 		15
B 1.8
(-3)
A 		3.6
(-2.6)
A 		3.7
(-2.5)
A 		4.4
(-2.4)
A 		11.6
(-0.6)
A 		26.1
(3)
P 		24
C 3.8
(-2.7)
A 		12.4
(1.8)
A 		8.6
(-0.2)
A 		3.3
(-3)
A 		6.5
(-1.3)
A 		14.7
(3)
P 		11
avr 4.1
(-2.5) 		8.3
(-0.9) 		7
(-1.4) 		2.8
(-3) 		9.1
(-0.6) 		18.7
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9853
Sequence Type Exemplar sequence
Representative Public ID F38H4.2 NCBI
Target Description F38H4.2 /REP_DB=WormBase Gene ID /WP=CE10060 /TR=Q20182 /GB=CAB01176.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069839 NCBI Caenorhabditis elegans F38H4.2 (F38H4.2) mRNA, complete cds. 11/11 None
F38H4.2 ENSEMBL cdna:known chromosome:CEL140:IV:11838950:11840214:1 gene:F38H4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007676 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11838955-11840220(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38H4.2
Entrez Gene 185478 Entrez gene
SwissProt Q20182 EMBL-EBI
WormBase CE10060 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01176 Hypothetical protein F38H4.2 [Caenorhabditis elegans] ref|NP_502240.1| F38H4.2 [Caenorhabditis elegans] 0.0
blast CAA98137 Hypothetical protein M117.5 [Caenorhabditis elegans] ref|NP_502237.1| M117.5 [Caenorhabditis elegans] 8.0E-57
blast T32324 hypothetical protein C41H7.2 - Caenorhabditis elegans 7.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-9
Sequence
Target Sequence 
>C. ELEGANS:178066_AT
gaatatcgttgggttctatgcagaatcctattttcaatagtttttcgtaccttgaaaact
ctttaagaaaccagtttctggagttggagggccttgcatatcttagagaattatatcgta
ccttgcaagaagaacacaaaattttgattcaaaactttaactatctcaatcccaatttgc
cttctacaggcaaaatgacattgaatgagttgttattaattaacagttctcacattactt
tgacttttaatgaaatggctttgaatgagaaaagtcttaatattttcttgaagcattgga
ttaatggatccaataaaaaacttgactatatgtacttatccggatttacacaactcggag
agacatcagtggctatcgaagcaatactcaaaaggattgttcataaagaggcttcccatg
acagactatttaagaagttctatgacccgggatcgaatggaaatatcggtgataattcat
caagtcttaaacatggatttgacataataagtaatgacggaacgcctgcaacagcttcta
tacgtata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATCGTTGGGTTCTATGCAGAA 645 325 506 Antisense
GTTTCTGGAGTTGGAGGGCCTTGCA 126 451 579 Antisense
GAGGGCCTTGCATATCTTAGAGAAT 26 403 592 Antisense
AAACTTTAACTATCTCAATCCCAAT 8 123 657 Antisense
CAATCCCAATTTGCCTTCTACAGGC 136 183 672 Antisense
AGTTCTCACATTACTTTGACTTTTA 168 65 730 Antisense
AGAGACATCAGTGGCTATCGAAGCA 208 69 864 Antisense
AAGAGGCTTCCCATGACAGACTATT 315 153 911 Antisense
GAAGTTCTATGACCCGGGATCGAAT 496 335 939 Antisense
GTAATGACGGAACGCCTGCAACAGC 253 463 1016 Antisense
GCCTGCAACAGCTTCTATACGTATA 187 283 1029 Antisense
Sequence Source Affymetrix Proprietary Database