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[178063_at]

Description Y5F2A.3 /REP_DB=WormBase Gene ID /WP=CE19024 /TR=Q9XWK9 /GB=CAA21648.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.5
(-3)
A 		3.6
(-2.9)
A 		8.5
(0)
A 		13.5
(3)
A 		10
B 4.4
(-3)
A 		7.1
(3)
A 		5.2
(-1.2)
A 		5.5
(-0.6)
A 		3
C 2.6
(-3)
A 		3.5
(-2)
A 		3.5
(-2)
A 		8.2
(3)
A 		6
avr 3.5
(-3) 		4.7
(-1.7) 		5.7
(-0.6) 		9.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5.8
(-0.6)
A 		4.7
(-2.6)
A 		7.8
(3)
A 		7.3
(2.1)
A 		4.5
(-3)
A 		5.8
(-0.6)
A 		3
B 3.7
(-1.7)
A 		6.9
(3)
A 		4.2
(-1)
A 		3.4
(-2.1)
A 		5.2
(0.5)
A 		2.8
(-3)
A 		4
C 3.9
(-0.3)
A 		3.2
(-1.8)
A 		4.9
(1.8)
A 		5.5
(3)
A 		2.8
(-2.6)
A 		2.6
(-3)
A 		3
avr 4.5
(-0.5) 		4.9
(0.8) 		5.6
(3) 		5.4
(2.4) 		4.2
(-1.4) 		3.7
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.3
(-0.9)
A 		0.8
(-3)
A 		2.2
(3)
A 		2
(2.1)
A 		1
B 1.4
(-1)
A 		1.8
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1
C 0.9
(-3)
A 		1
(-1.8)
A 		1.2
(0.6)
A 		1.4
(3)
A 		0
avr 1.2
(-3) 		1.2
(-3) 		1.5
(3) 		1.5
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.7
(1.5)
A 		1.7
(1.5)
A 		1.9
(3)
A 		1.4
(-0.8)
A 		1.4
(-0.8)
A 		1
B 1.3
(-1.3)
A 		2.3
(3)
A 		1
(-2.6)
A 		0.9
(-3)
A 		2.1
(2.1)
A 		1.1
(-2.1)
A 		1
C 1.5
(3)
A 		1
(-2)
A 		1.3
(1)
A 		1.1
(-1)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1
avr 1.3
(-1) 		1.7
(3) 		1.3
(-1) 		1.3
(-1) 		1.5
(1) 		1.1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8551
Sequence Type Exemplar sequence
Representative Public ID Y5F2A.3 NCBI
Target Description Y5F2A.3 /REP_DB=WormBase Gene ID /WP=CE19024 /TR=Q9XWK9 /GB=CAA21648.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069661 NCBI Caenorhabditis elegans Y5F2A.3 (Y5F2A.3) mRNA, complete cds. 11/11 None
SNAP00000001505 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11069510:11075917:1 11/11 None
GENEFINDER00000001510 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11069359:11076030:1 11/11 None
Y5F2A.3 ENSEMBL cdna:known chromosome:CEL140:IV:11069359:11070230:1 gene:Y5F2A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11069364-11070236(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y5F2A.3
Entrez Gene 189358 Entrez gene
SwissProt Q9XWK9 EMBL-EBI
WormBase CE19024 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21648 Hypothetical protein Y5F2A.3 [Caenorhabditis elegans] ref|NP_502062.1| Y5F2A.3 [Caenorhabditis elegans] 1.0E-103
blast CAA21648 Hypothetical protein Y5F2A.3 [Caenorhabditis elegans] ref|NP_502062.1| Y5F2A.3 [Caenorhabditis elegans] 3.0E-99
blast CAE72563 Hypothetical protein CBG19747 [Caenorhabditis briggsae] 8.0E-96
blast CAE72563 Hypothetical protein CBG19747 [Caenorhabditis briggsae] 5.0E-92
blast CAA21648 Hypothetical protein Y5F2A.3 [Caenorhabditis elegans] ref|NP_502062.1| Y5F2A.3 [Caenorhabditis elegans] 2.0E-86
blast CAE72563 Hypothetical protein CBG19747 [Caenorhabditis briggsae] 1.0E-68
blast XP_823317 hypothetical protein Tb10.26.0960 [Trypanosoma brucei] gb|EAN78489.1| hypothetical protein, conserved [Trypanosoma brucei] 3.0E-31
blast CAA62189 elastic titin [Homo sapiens] 4.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.3E-18
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.3E-18
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.3E-18
Sequence
Target Sequence 
>C. ELEGANS:178063_AT
gacggagacacaagctaaacctggtggacttgttggttttttcaagtcgtcatctttcga
gaggacaccaccggaggagcataagacctatgcatttcaggcgaatcgagaaaaaaacag
aaatcctgattttccattgtacgatgttacacgtgtacggcttaaaacagaagcagaaga
tgaaaaaaattacatcaatgcttcaattacttcatgtccaccttgtgaacgcaaatggat
tgttgctcaacatccaatgaaagaatattacgaatatttttggaaaatggttttctatca
ggaaattgatgtgatttttgcaattttctccccggatgagcaacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGAGACACAAGCTAAACCTGGT 690 375 231 Antisense
AGCTAAACCTGGTGGACTTGTTGGT 187 1 243 Antisense
GGTTTTTTCAAGTCGTCATCTTTCG 612 505 265 Antisense
CATCTTTCGAGAGGACACCACCGGA 116 211 281 Antisense
GACACCACCGGAGGAGCATAAGACC 101 369 294 Antisense
AGACCTATGCATTTCAGGCGAATCG 448 69 314 Antisense
GTACGATGTTACACGTGTACGGCTT 419 459 369 Antisense
TGCTTCAATTACTTCATGTCCACCT 463 579 429 Antisense
CATGTCCACCTTGTGAACGCAAATG 498 207 443 Antisense
ATGGATTGTTGCTCAACATCCAATG 416 51 465 Antisense
ATTTTCTCCCCGGATGAGCAACTTC 70 15 553 Antisense
Sequence Source Affymetrix Proprietary Database