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[178062_at]

Description K09E9.3 /REP_DB=WormBase Gene ID /WP=CE12014 /TR=Q93879 /GB=CAB01890.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 152.2
(-1.8)
P 		140.6
(-2.2)
A 		115.8
(-3)
A 		296.7
(3)
P 		181
B 146.2
(0.6)
P 		150.1
(0.8)
A 		91.3
(-3)
A 		183.3
(3)
P 		92
C 220.1
(3)
P 		162.1
(-1.2)
A 		137.2
(-3)
A 		172.6
(-0.4)
P 		83
avr 172.8
(0.4) 		150.9
(-0.9) 		114.8
(-3) 		217.5
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 244.9
(3)
P 		169.8
(0.1)
P 		138.4
(-1.1)
A 		146.6
(-0.8)
A 		89.7
(-3)
A 		145.8
(-0.8)
P 		155
B 218.7
(3)
P 		180
(1.2)
P 		92.4
(-3)
A 		106.9
(-2.3)
A 		104.2
(-2.4)
A 		177.2
(1)
P 		126
C 241.5
(3)
P 		214.7
(1.9)
P 		192.8
(1)
P 		160
(-0.4)
A 		98.7
(-3)
A 		187.1
(0.7)
P 		143
avr 235
(3) 		188.2
(1) 		141.2
(-1.1) 		137.8
(-1.2) 		97.5
(-3) 		170
(0.2) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 55.4
(3)
P 		30.5
(-3)
A 		30.3
(-3)
A 		43.4
(0.1)
P 		25
B 46.6
(3)
P 		37.1
(0.8)
A 		21.2
(-3)
A 		39.1
(1.2)
P 		25
C 72.8
(3)
P 		46.6
(-0.6)
A 		47.8
(-0.4)
A 		29.1
(-3)
P 		44
avr 58.3
(3) 		38.1
(-1.8) 		33.1
(-3) 		37.2
(-2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 45.2
(0.3)
P 		60.4
(3)
P 		30.1
(-2.5)
A 		37.2
(-1.2)
A 		27.1
(-3)
A 		35.5
(-1.5)
P 		33
B 76.1
(3)
P 		59.9
(1.2)
P 		22.4
(-3)
A 		28.3
(-2.3)
A 		42.3
(-0.8)
A 		66.1
(1.9)
P 		54
C 89.5
(3)
P 		65.5
(0.5)
P 		49.1
(-1.2)
P 		32.2
(-3)
A 		32
(-3)
A 		62.6
(0.2)
P 		58
avr 70.3
(3) 		61.9
(1.7) 		33.9
(-2.8) 		32.6
(-3) 		33.8
(-2.8) 		54.7
(0.5) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17436
Sequence Type Exemplar sequence
Representative Public ID K09E9.3 NCBI
Target Description K09E9.3 /REP_DB=WormBase Gene ID /WP=CE12014 /TR=Q93879 /GB=CAB01890.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078173(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078173 NCBI Caenorhabditis elegans K09E9.3 (K09E9.3) mRNA, complete cds. 11/11 None
SNAP00000003229 ENSEMBL cdna:SNAP chromosome:CEL140:X:15612051:15613678:-1 10/11 None
GENEFINDER00000003237 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15612051:15613678:-1 10/11 None
K09E9.3 ENSEMBL cdna:known chromosome:CEL140:X:15611763:15613709:-1 gene:K09E9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15611762-15613678(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E9.3
Entrez Gene 181651 Entrez gene
SwissProt Q93879 EMBL-EBI
WormBase CE12014 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01890 Hypothetical protein K09E9.3 [Caenorhabditis elegans] ref|NP_510574.1| K09E9.3 [Caenorhabditis elegans] 0.0
blast CAE63335 Hypothetical protein CBG07735 [Caenorhabditis briggsae] 6.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510574.1 1 451-473
K09E9.3 1 451-473
Sequence
Target Sequence 
>C. ELEGANS:178062_AT
ggaacatggacctggctggtatcgataatagagagatgttgttcaagaaacgcattcaac
agcagaagctcactgcaatgttcaatatttataacgataaagaaattggcgaagagctag
atggagttgtcaaagagatagagacactggcaaacgacattcaggagaaggacgcggaaa
ctgtcactcaactgcaggttttgaaggaatcgtttggtggcgcttgggaaaaggctcgca
agtgcttgggcaccaagtcggctttgtcatcggatgacagaaacattcgaagactccagg
aaaaacttgaagaagcggaaaaggaaaatgcaaaattgcgtagtctattggaaaaggaaa
aggccaagaaccgttcggacgatgggaagcacagctcaaagtacttgaaaaaggataaag
gtcgcgataaggatgaggaagacgagcgtcgcgaacgcaagcacaaagtcaaggaccgag
acgaggcttcgtcctcctcctcctcccattctttttcagccaagcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACATGGACCTGGCTGGTATCGA 598 525 821 Antisense
GAAGCTCACTGCAATGTTCAATATT 288 343 885 Antisense
GACGCGGAAACTGTCACTCAACTGC 624 375 991 Antisense
GTGGCGCTTGGGAAAAGGCTCGCAA 590 491 1037 Antisense
AAGGCTCGCAAGTGCTTGGGCACCA 336 161 1051 Antisense
CCAAGTCGGCTTTGTCATCGGATGA 557 275 1073 Antisense
AAGGCCAAGAACCGTTCGGACGATG 9 157 1180 Antisense
TCGGACGATGGGAAGCACAGCTCAA 592 605 1195 Antisense
AGACGAGCGTCGCGAACGCAAGCAC 215 71 1260 Antisense
AGGACCGAGACGAGGCTTCGTCCTC 621 53 1292 Antisense
TCCCATTCTTTTTCAGCCAAGCGAA 133 599 1324 Antisense
Sequence Source Affymetrix Proprietary Database