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[178060_at]

Description F11F1.4 /REP_DB=WormBase Gene ID /WP=CE15804 /TR=Q9XVQ6 /GB=CAB02926.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.1
(-2.7)
A 		13.3
(2.5)
A 		1.4
(-3)
A 		14.4
(3)
A 		13
B 12.3
(-0.8)
A 		23.8
(3)
A 		8.5
(-2)
A 		5.4
(-3)
A 		18
C 0.7
(-3)
A 		20.1
(3)
A 		2.8
(-2.4)
A 		3.2
(-2.2)
A 		19
avr 5
(-2.7) 		19.1
(3) 		4.2
(-3) 		7.7
(-1.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4.6
(-1.9)
A 		1.4
(-2.9)
A 		17.3
(2.1)
A 		20.2
(3)
A 		1.2
(-3)
A 		2.1
(-2.7)
A 		19
B 3.6
(-2.5)
A 		11.2
(-0.8)
A 		28.6
(3)
A 		15.5
(0.1)
A 		1.2
(-3)
A 		16.2
(0.3)
A 		27
C 0.8
(-3)
A 		5.1
(-2)
A 		26.7
(3)
A 		13.8
(0)
A 		1.3
(-2.9)
A 		1.3
(-2.9)
A 		26
avr 3
(-2.5) 		5.9
(-1.8) 		24.2
(3) 		16.5
(1) 		1.2
(-3) 		6.5
(-1.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.8
(-2)
A 		2.9
(3)
A 		0.4
(-3)
A 		2.1
(1.1)
A 		3
B 3.9
(0.5)
A 		5.9
(3)
A 		2
(-1.9)
A 		1.1
(-3)
A 		5
C 0.2
(-3)
A 		5.8
(3)
A 		1
(-2.1)
A 		0.5
(-2.7)
A 		6
avr 1.6
(-2.2) 		4.9
(3) 		1.1
(-3) 		1.2
(-2.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.8
(-2.5)
A 		0.5
(-2.9)
A 		3.8
(1.3)
A 		5.1
(3)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		5
B 1.3
(-2.3)
A 		3.7
(0)
A 		6.9
(3)
A 		4.1
(0.4)
A 		0.5
(-3)
A 		6.1
(2.3)
A 		6
C 0.3
(-3)
A 		1.6
(-1.8)
A 		6.8
(3)
A 		2.8
(-0.7)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		7
avr 0.8
(-2.6) 		1.9
(-1.3) 		5.8
(3) 		4
(1) 		0.4
(-3) 		2.3
(-0.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6404
Sequence Type Exemplar sequence
Representative Public ID F11F1.4 NCBI
Target Description F11F1.4 /REP_DB=WormBase Gene ID /WP=CE15804 /TR=Q9XVQ6 /GB=CAB02926.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067363 NCBI Caenorhabditis elegans F11F1.4 (F11F1.4) mRNA, complete cds. 11/11 None
SNAP00000021812 ENSEMBL cdna:SNAP chromosome:CEL140:III:13400478:13401289:-1 11/11 None
GENEFINDER00000021817 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13400478:13401289:-1 11/11 None
F11F1.4 ENSEMBL cdna:known chromosome:CEL140:III:13400478:13401289:-1 gene:F11F1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13400473-13401285(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11F1.4
Entrez Gene 184360 Entrez gene
SwissProt Q9XVQ6 EMBL-EBI
WormBase CE15804 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02926 Hypothetical protein F11F1.4 [Caenorhabditis elegans] ref|NP_499764.1| F11F1.4 [Caenorhabditis elegans] 2.0E-70
blast CAB02925 Hypothetical protein F11F1.2 [Caenorhabditis elegans] ref|NP_499763.1| F11F1.2 [Caenorhabditis elegans] 7.0E-49
blast CAB02927 Hypothetical protein F11F1.5 [Caenorhabditis elegans] ref|NP_499765.1| F11F1.5 [Caenorhabditis elegans] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 3.6E-30
Sequence
Target Sequence 
>C. ELEGANS:178060_AT
aattccagaaagtgctctcccaaaagttcaagacattctctcaaaggtggataatcttgg
agttgaggaagttctatccgaacttaatgatcttgtacctggtcttggagatgaacttga
aaatcttatttcaacagtcttcaaccttattgaacagttgctcaatgaagtagctgatgt
tgtgagaagcctttcagatgtctttggaaagttgtctgatatcatcggtaacgacaaact
gacatctgttgagaagaacgatgcaattaatcaattgaaagaaacaaatgaaattgaatt
taatacaatcattttcattatcactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCAGAAAGTGCTCTCCCAAAA 159 177 354 Antisense
AAGTGCTCTCCCAAAAGTTCAAGAC 275 159 363 Antisense
AGTTCAAGACATTCTCTCAAAGGTG 417 63 378 Antisense
CGAACTTAATGATCTTGTACCTGGT 190 253 432 Antisense
TTATTTCAACAGTCTTCAACCTTAT 364 675 479 Antisense
TCAACCTTATTGAACAGTTGCTCAA 369 631 494 Antisense
AGCTGATGTTGTGAGAAGCCTTTCA 547 79 525 Antisense
GAGAAGCCTTTCAGATGTCTTTGGA 461 391 537 Antisense
AAGTTGTCTGATATCATCGGTAACG 382 155 562 Antisense
ATCGGTAACGACAAACTGACATCTG 473 33 577 Antisense
ATACAATCATTTTCATTATCACTCA 219 25 656 Antisense
Sequence Source Affymetrix Proprietary Database