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[178058_at]

Description F10F2.9 /REP_DB=WormBase Gene ID /WP=CE00954 /TR=Q19318 /GB=CAA84658.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 48      6grp_total_sub > Hat      6grp_cgc > 53      6grp_cgc_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 3.1
(-3)
A 		52.1
(1.4)
A 		70.6
(3)
P 		32.2
(-0.4)
A 		68
B 10.6
(-2.3)
A 		24.2
(-0.4)
A 		47.8
(3)
A 		5.8
(-3)
A 		42
C 11.5
(-3)
A 		56.5
(3)
A 		40.6
(0.9)
A 		22
(-1.6)
A 		45
avr 8.4
(-3) 		44.3
(1.8) 		53
(3) 		20
(-1.4) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 31.9
(-3)
A 		51.3
(3)
A 		48.5
(2.1)
M 		49.6
(2.5)
M 		39.2
(-0.7)
A 		42.8
(0.4)
A 		19
B 49.1
(-0.5)
P 		75
(3)
A 		42.9
(-1.4)
P 		31
(-3)
A 		37.7
(-2.1)
M 		68.9
(2.2)
P 		44
C 39
(-0.6)
P 		66.8
(3)
P 		22.2
(-2.8)
A 		65.7
(2.9)
A 		20.8
(-3)
A 		41.9
(-0.2)
P 		46
avr 40
(-1.6) 		64.4
(3) 		37.9
(-2) 		48.8
(0.1) 		32.6
(-3) 		51.2
(0.5) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.1
(-3)
A 		11.3
(0.5)
A 		18.5
(3)
P 		4.7
(-1.8)
A 		17
B 3.4
(-1.7)
A 		6
(-0.1)
A 		11.1
(3)
A 		1.2
(-3)
A 		10
C 3.8
(-3)
A 		16.2
(3)
A 		14.2
(2)
A 		3.7
(-3)
A 		13
avr 2.8
(-3) 		11.2
(1.3) 		14.6
(3) 		3.2
(-2.8) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.9
(-3)
A 		18.3
(3)
A 		10.6
(-0.7)
M 		12.6
(0.2)
M 		11.8
(-0.1)
A 		10.4
(-0.8)
A 		12
B 17.1
(0.1)
P 		25
(2.8)
A 		10.4
(-2.2)
P 		8.2
(-3)
A 		15.3
(-0.6)
M 		25.7
(3)
P 		18
C 14.5
(0.6)
P 		20.4
(3)
P 		5.7
(-3)
A 		13.2
(0.1)
A 		6.7
(-2.6)
A 		14
(0.4)
P 		15
avr 12.5
(-1.2) 		21.2
(3) 		8.9
(-3) 		11.3
(-1.8) 		11.3
(-1.8) 		16.7
(0.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7185
Sequence Type Exemplar sequence
Representative Public ID F10F2.9 NCBI
Target Description F10F2.9 /REP_DB=WormBase Gene ID /WP=CE00954 /TR=Q19318 /GB=CAA84658.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065547 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-29) (pqn-29) mRNA, complete cds. 11/11 None
F10F2.9 ENSEMBL cdna:known chromosome:CEL140:III:4643962:4646296:-1 gene:F10F2.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4643961-4646296(-) 93.88 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-29
Ensembl F10F2.9
Entrez Gene 184312 Entrez gene
SwissProt Q19318 EMBL-EBI
WormBase CE00954 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86461 Hypothetical protein F10F2.9 [Caenorhabditis elegans] emb|CAA84658.1| Hypothetical protein F10F2.9 [Caenorhabditis elegans] ref|NP_497948.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-29) [Caenorhabditis elegans] 1.0E-80
blast CAE71167 Hypothetical protein CBG18024 [Caenorhabditis briggsae] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:178058_AT
ggatcaaatggaggttctggaggaggaaatactgataatgataactggggaagcaataat
ggcaattctggaggatcatggggaaatggtggaactggaggatctggaggctctggaggt
ggaaactggggagacaatgataactatggcagtagcaacaaatggaatggaaatggaaat
caggataatgacaatgataactttggaggaggatacagtaagaatggatacggtagcaat
aacaatagaaacgacggatggggatcttctagtagcaataataacaataataataataat
aataataatggaggaactggaggatacagtaacaacggaggaggatggggtagcaataat
aataataatggaaatgatggaaacaattgggaatccaataatggaggaaatggcggtggt
ggtgataactggaataatggaaacagtggcaacaatggaaataataatggtaatggagat
gaagattatggagattggtacaatatgaagatgaaagatccatctgtagctgaagattca
acgactaaaacacctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCAAATGGAGGTTCTGGAGGAG 430 511 1051 Antisense
GGGGAAGCAATAATGGCAATTCTGG 706 497 1097 Antisense
TGGCAATTCTGGAGGATCATGGGGA 640 545 1110 Antisense
GGAGGATCTGGAGGCTCTGGAGGTG 670 515 1147 Antisense
GGGAGACAATGATAACTATGGCAGT 654 495 1179 Antisense
GAAACGACGGATGGGGATCTTCTAG 337 357 1298 Antisense
GGATGGGGATCTTCTAGTAGCAATA 55 515 1306 Antisense
ACAACGGAGGAGGATGGGGTAGCAA 255 111 1382 Antisense
ATGGCGGTGGTGGTGATAACTGGAA 335 53 1460 Antisense
ATCCATCTGTAGCTGAAGATTCAAC 628 39 1568 Antisense
GAAGATTCAACGACTAAAACACCTG 365 337 1582 Antisense
Sequence Source Affymetrix Proprietary Database