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[178057_at]

Description W02H3.2 /REP_DB=WormBase Gene ID /WP=CE03774 /TR=Q23131 /GB=CAA92021.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 13      6grp_total > 62      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 41.3
(-1.7)
P 		44.9
(-0.9)
A 		35.2
(-3)
P 		63
(3)
P 		28
B 40
(-2.6)
A 		49.5
(2.2)
P 		39.1
(-3)
A 		51.2
(3)
P 		12
C 23.8
(-3)
A 		32.1
(-2.4)
P 		42
(-1.6)
P 		103
(3)
P 		79
avr 35
(-3) 		42.2
(-1.8) 		38.8
(-2.4) 		72.4
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 33
(-1.6)
A 		30.4
(-2.1)
A 		32.7
(-1.7)
P 		54.3
(2.5)
P 		57
(3)
P 		25.7
(-3)
A 		31
B 26.8
(-0.1)
P 		27.8
(0.1)
P 		39.5
(3)
P 		15.1
(-3)
A 		26.5
(-0.2)
A 		28.8
(0.4)
A 		24
C 33.4
(-1.8)
P 		28.3
(-3)
A 		53.3
(3)
P 		40.1
(-0.2)
P 		35.2
(-1.3)
A 		31.7
(-2.2)
A 		25
avr 31.1
(-1.9) 		28.8
(-3) 		41.8
(3) 		36.5
(0.6) 		39.6
(2) 		28.7
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 15
(3)
P 		9.8
(-2.4)
A 		9.2
(-3)
P 		9.2
(-3)
P 		6
B 12.8
(3)
A 		12.2
(2)
P 		9.1
(-3)
A 		10.9
(-0.1)
P 		4
C 7.9
(-3)
A 		9.2
(-2.2)
P 		14.6
(1.2)
P 		17.4
(3)
P 		10
avr 11.9
(1.3) 		10.4
(-3) 		11
(-1.3) 		12.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.1
(-3)
A 		10.8
(-0.5)
A 		7.1
(-2.5)
P 		13.8
(1.2)
P 		17.2
(3)
P 		6.3
(-2.9)
A 		11
B 9.3
(1.7)
P 		9.2
(1.6)
P 		9.6
(1.9)
P 		4
(-3)
A 		10.8
(3)
A 		10.7
(2.9)
A 		7
C 12.4
(1.7)
P 		8.6
(-2.5)
A 		13.6
(3)
P 		8.1
(-3)
P 		11.4
(0.6)
A 		10.6
(-0.3)
A 		6
avr 9.3
(-2.1) 		9.5
(-1.8) 		10.1
(-1) 		8.6
(-3) 		13.1
(3) 		9.2
(-2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16134
Sequence Type Exemplar sequence
Representative Public ID W02H3.2 NCBI
Target Description W02H3.2 /REP_DB=WormBase Gene ID /WP=CE03774 /TR=Q23131 /GB=CAA92021.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077456 NCBI Caenorhabditis elegans W02H3.2 (W02H3.2) mRNA, complete cds. 11/11 None
W02H3.2 ENSEMBL cdna:known chromosome:CEL140:X:11096174:11099526:-1 gene:W02H3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037119 8/11 Cross Hyb Matching Probes None
SNAP00000037115 2/11 Cross Hyb Matching Probes None
SNAP00000037116 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11096173-11099526(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02H3.2
Entrez Gene 189131 Entrez gene
SwissProt Q23131 EMBL-EBI
WormBase CE03774 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92021 Hypothetical protein W02H3.2 [Caenorhabditis elegans] ref|NP_509857.1| W02H3.2 [Caenorhabditis elegans] 1.0E-123
blast CAA95786 Hypothetical protein C01H6.9 [Caenorhabditis elegans] emb|CAA95847.1| Hypothetical protein C01H6.9 [Caenorhabditis elegans] emb|CAB10931.1| Hypothetical protein C01H6.9 [Caenorhabditis elegans] ref|NP_492043.1| C01H6.9 [Caenorhabditis elegans] 3.0E-27
blast NP_490768 Y18H1A.10 [Caenorhabditis elegans] gb|AAK21513.2| Hypothetical protein Y18H1A.10 [Caenorhabditis elegans] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:178057_AT
cgagcacacgtgtcttttttatttctccatattttatttccttttgcaagtgtcaattta
gcaaaacactttgcttgattcagtttcatttctattttcatccattcaatcaatcaatgg
acgtgccttttcaaaaccctgatgtgcttcgtttagccgaattacaagtcaatccaattt
tagatgctctcaataacgcgttcgatgagttttcccgtgttgtggtaagtaattgtaatg
ttgtggtaaaaagcacgaccttcgttgacgactgctgtgattgtggaaaacataagagaa
gaactaattggtttcgtcaacgtgatcactatgcaaatgaacactggaaatgtcaccgga
cttgtggttcgactactatctactgggacttggaaaaggacacagaaattttcaagggaa
aagatggtccacaatttgaagtatatcgagaaatgagaatctattgcaaaagcgattgga
agaaatttttgaaaagaacaaatcttatgtggatttcattcattgcgcagcgattgattg
gcacgaaaatctgcccgaagggacttcttacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCACACGTGTCTTTTTTATTTC 709 249 26 Antisense
GTTTCATTTCTATTTTCATCCATTC 135 451 108 Antisense
TCAATGGACGTGCCTTTTCAAAACC 249 633 139 Antisense
AAACCCTGATGTGCTTCGTTTAGCC 241 125 159 Antisense
AGATGCTCTCAATAACGCGTTCGAT 468 67 207 Antisense
CGATGAGTTTTCCCGTGTTGTGGTA 434 249 228 Antisense
AAAGCACGACCTTCGTTGACGACTG 485 123 275 Antisense
ATGTCACCGGACTTGTGGTTCGACT 98 47 375 Antisense
GGTTCGACTACTATCTACTGGGACT 89 507 391 Antisense
TGTGGATTTCATTCATTGCGCAGCG 558 555 533 Antisense
TCTGCCCGAAGGGACTTCTTACGGA 443 597 575 Antisense
Sequence Source Affymetrix Proprietary Database