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[178055_at]

Description T12D8.7 /REP_DB=WormBase Gene ID /WP=CE16404 /TR=O45784 /GB=CAB03347.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      6grp_total > 96      4grp_total > 12      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 234.4
(-3)
P 		270.8
(-0.4)
A 		235.7
(-2.9)
A 		317.9
(3)
P 		84
B 302.7
(2.9)
P 		263.7
(-1.1)
A 		245.4
(-3)
M 		303.2
(3)
P 		58
C 290.1
(-0.1)
P 		233.4
(-3)
A 		252.4
(-2)
P 		351.6
(3)
P 		118
avr 275.7
(-0.7) 		256
(-2.1) 		244.5
(-3) 		324.2
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 179.4
(-3)
P 		225.2
(-2.1)
P 		258.8
(-1.5)
P 		321
(-0.4)
P 		440.1
(1.9)
P 		500.5
(3)
P 		321
B 191.9
(-2.8)
P 		181.9
(-3)
A 		320.6
(-0.4)
P 		330.3
(-0.2)
P 		497.1
(3)
P 		415.1
(1.4)
P 		315
C 287.6
(-2.3)
P 		242.4
(-3)
P 		289.7
(-2.3)
P 		397.1
(-0.7)
P 		432.4
(-0.1)
P 		639.8
(3)
P 		397
avr 219.6
(-2.9) 		216.5
(-3) 		289.7
(-1.5) 		349.5
(-0.4) 		456.5
(1.8) 		518.5
(3) 		302
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 85.3
(3)
P 		58.8
(-1.1)
A 		61.6
(-0.7)
A 		46.5
(-3)
P 		39
B 96.5
(3)
P 		65.1
(-1.8)
A 		56.9
(-3)
M 		64.6
(-1.8)
P 		40
C 96
(3)
P 		67.1
(-1.7)
A 		88
(1.7)
P 		59.3
(-3)
P 		37
avr 92.6
(3) 		63.7
(-1.8) 		68.8
(-1) 		56.8
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 33.1
(-3)
P 		80.1
(-0.2)
P 		56.4
(-1.6)
P 		81.4
(-0.1)
P 		132.8
(3)
P 		121.9
(2.3)
P 		100
B 66.8
(-2.7)
P 		60.6
(-3)
A 		77.8
(-2.3)
P 		87.5
(-1.9)
P 		202
(3)
P 		154.8
(1)
P 		141
C 106.6
(-1.6)
P 		73.9
(-3)
P 		73.7
(-3)
P 		79.9
(-2.7)
P 		139.9
(-0.2)
P 		214.2
(3)
P 		141
avr 68.8
(-3) 		71.5
(-2.8) 		69.3
(-3) 		82.9
(-2.1) 		158.2
(2.7) 		163.6
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6079
Sequence Type Exemplar sequence
Representative Public ID T12D8.7 NCBI
Target Description T12D8.7 /REP_DB=WormBase Gene ID /WP=CE16404 /TR=O45784 /GB=CAB03347.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067413(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067413 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-9) (taf-9) mRNA, complete cds. 11/11 None
SNAP00000041264 ENSEMBL cdna:SNAP chromosome:CEL140:III:13623800:13625420:1 11/11 None
GENEFINDER00000041278 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13623800:13625420:1 11/11 None
T12D8.7 ENSEMBL cdna:known chromosome:CEL140:III:13623800:13625457:1 gene:T12D8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13623795-13625416(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol taf-9
Ensembl T12D8.7
Entrez Gene 176798 Entrez gene
SwissProt O45784 EMBL-EBI
WormBase CE16404 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6352 transcription initiation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5669 transcription factor TFIID complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03347 Hypothetical protein T12D8.7 [Caenorhabditis elegans] ref|NP_499814.1| TAF (TBP-associated transcription factor) family member (taf-9) [Caenorhabditis elegans] 1.0E-101
blast CAE71348 Hypothetical protein CBG18251 [Caenorhabditis briggsae] 3.0E-80
blast AAF48767 CG6474-PA [Drosophila melanogaster] ref|NP_523391.3| CG6474-PA [Drosophila melanogaster] sp|Q27272|TAF9_DROME Transcription initiation factor TFIID subunit 9 (Transcription initiation factor TFIID 42 kDa subunit) (TAFII-42) (TAFII40) (p42) (Enhancer of yellow 1 protein) gb|AAC47347.1| transcription initiation factor TFIID 42 kDa subunit gb|AAA28488.1| TAFII40 2.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR003162 EMBL-EBI Transcription factor TAFII-31 2.8E-82
Sequence
Target Sequence 
>C. ELEGANS:178055_AT
gacggcaagtggtaccgatggacacagtaaagaggcgcttgctgtaataagcatgctcca
cgagtgtggaattcaagagtttgatccacgcgtcgtttcaatgcttatggatgttcaata
cgcagtgacgtcaaaaatcctccaaatgtcaagtggactgtccaggcatgctgaaaaagc
gcaaatcgaggcagaagacgttcaaacggcggccgacatgctcggcgttctgaccacaaa
cgctccggaccgtgagaagattctgcaattggcgaatgacaaaaatcagcagcccctacc
gcaaattcgacacaattatggcctgaagctgcccaacgatcgattctgtcaattacagca
gaattttgtgtacaaagctgacgacagttatcagccaatggaaatgcaacaagtcaccca
tcagccacatatcatcgaaccaccaacacaagtgctacggccggagcatgtacagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGCAAGTGGTACCGATGGACAC 328 377 45 Antisense
TTCAAGAGTTTGATCCACGCGTCGT 500 683 116 Antisense
CACGCGTCGTTTCAATGCTTATGGA 427 199 131 Antisense
GCAGTGACGTCAAAAATCCTCCAAA 168 311 166 Antisense
AGTGGACTGTCCAGGCATGCTGAAA 287 59 196 Antisense
TTCAAACGGCGGCCGACATGCTCGG 174 655 245 Antisense
TGCTCGGCGTTCTGACCACAAACGC 322 577 263 Antisense
CACAAACGCTCCGGACCGTGAGAAG 188 191 279 Antisense
ACAATTATGGCCTGAAGCTGCCCAA 215 115 356 Antisense
CCACCAACACAAGTGCTACGGCCGG 253 271 484 Antisense
GCTACGGCCGGAGCATGTACAGAAT 515 275 498 Antisense
Sequence Source Affymetrix Proprietary Database