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[178054_at]

Description C06G8.3 /REP_DB=WormBase Gene ID /WP=CE05231 /TR=Q17759 /GB=CAA94324.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 06      4grp_high_8_8 > 29      6grp_highest_nonorm > 74      6grp_total > 90      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 492
1 2 3 4 range
A 900.9
(-3)
P 		1183.8
(0.8)
P 		1007.4
(-1.6)
P 		1347.6
(3)
P 		447
B 880.1
(-3)
P 		1113.1
(-0.2)
P 		1088.2
(-0.5)
P 		1372.4
(3)
P 		492
C 929.6
(-3)
P 		1201.5
(0.9)
P 		1073
(-0.9)
P 		1345.6
(3)
P 		416
avr 903.5
(-3) 		1166.1
(0.5) 		1056.2
(-1) 		1355.2
(3) 		452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 864.1
(2.8)
P 		870.1
(3)
P 		809.8
(0.9)
P 		852
(2.4)
P 		695.6
(-3)
P 		838.4
(1.9)
P 		175
B 811.9
(-0.6)
P 		793.7
(-1.4)
P 		771.9
(-2.4)
P 		889.9
(3)
P 		759.9
(-3)
P 		823.6
(-0.1)
P 		130
C 692.2
(-1.3)
P 		819.2
(3)
P 		640.7
(-3)
P 		808.6
(2.6)
P 		815.4
(2.9)
P 		751.5
(0.7)
P 		179
avr 789.4
(-0.3) 		827.7
(1.8) 		740.8
(-3) 		850.2
(3) 		757
(-2.1) 		804.5
(0.5) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 328
(3)
P 		257
(-0.3)
P 		263.3
(0)
P 		197.3
(-3)
P 		131
B 280.7
(1.3)
P 		274.9
(0.4)
P 		252.2
(-3)
P 		292.4
(3)
P 		40
C 307.7
(0.3)
P 		345.4
(1.8)
P 		374
(3)
P 		226.9
(-3)
P 		147
avr 305.5
(3) 		292.4
(1.8) 		296.5
(2.2) 		238.9
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 159.3
(-3)
P 		309.4
(3)
P 		176.4
(-2.3)
P 		216.1
(-0.7)
P 		209.9
(-1)
P 		204.1
(-1.2)
P 		150
B 282.5
(1.7)
P 		264.2
(0.8)
P 		187.4
(-3)
P 		235.7
(-0.6)
P 		308.7
(3)
P 		307.1
(2.9)
P 		121
C 256.6
(2.6)
P 		250
(2.2)
P 		163.1
(-3)
P 		162.6
(-3)
P 		263.9
(3)
P 		251.6
(2.3)
P 		101
avr 232.8
(0.5) 		274.5
(3) 		175.6
(-3) 		204.8
(-1.2) 		260.8
(2.2) 		254.3
(1.8) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9732
Sequence Type Exemplar sequence
Representative Public ID C06G8.3 NCBI
Target Description C06G8.3 /REP_DB=WormBase Gene ID /WP=CE05231 /TR=Q17759 /GB=CAA94324.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001031625(11), NR_002446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001031625 NCBI Caenorhabditis elegans hypothetical protein (C06G8.3) mRNA, complete cds. 11/11 None
NR_002446 NCBI Caenorhabditis elegans C06G8.3, miscRNA. 11/11 None
SNAP00000028246 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10799656:10801964:1 11/11 None
GENEFINDER00000028248 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10799656:10801958:1 11/11 None
C06G8.3b ENSEMBL cdna:known chromosome:CEL140:IV:10799648:10802210:1 gene:C06G8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10800635-10801970(+) 100.0 100.0
Public Domain and Genome References
Ensembl C06G8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04694 Hypothetical protein C06G8.3b [Caenorhabditis elegans] ref|NP_001026796.1| hypothetical protein C06G8.3 [Caenorhabditis elegans] 1.0E-158
blast CAH04694 Hypothetical protein C06G8.3b [Caenorhabditis elegans] ref|NP_001026796.1| hypothetical protein C06G8.3 [Caenorhabditis elegans] 1.0E-139
blast CAE70853 Hypothetical protein CBG17638 [Caenorhabditis briggsae] 7.0E-97
blast CAE70853 Hypothetical protein CBG17638 [Caenorhabditis briggsae] 2.0E-92
blast T19018 hypothetical protein C06G8.3 - Caenorhabditis elegans 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 4.2E-57
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 5.8E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001026796.1 6 12-34,46-68,88-105,244-266,281-303,315-332
C06G8.3b 6 12-34,46-68,88-105,244-266,281-303,315-332
SNAP00000028246 6 12-34,46-68,88-105,218-240,255-277,289-306
GENEFINDER00000028248 6 12-34,46-68,88-105,218-240,255-277,289-306
Sequence
Target Sequence 
>C. ELEGANS:178054_AT
aacagcgccatgggttgtttcggatgagaaaagaaatcttctcaaatcacttacatttgc
cattgcaatgtctttccattcacttctagaaggatttgcactcggagttcaagattctga
tgctgccatttggacattgttcctttctcttcttcttcacaagtcgattgaagcattttc
agtcggattgcaaatttcaagagctaatacagagaagaaaggaattgtcatgtgcacaat
tctcgtctatgcacttatgacaccacttggatcagttcttggaaccttgctacagaacac
cggagataaatcatttggaaaagattgcactattgtatttttagaagcaatggctgctgg
aactttcatttatgttacattccttgaaattcttgccgcagaaaaagagaatcgattcaa
ttcgctcaagcaattgttatgtattggtcttggttttatggttattcttgctttacaatt
tttctttggacatgaaggtcatggtcacggacatccagatcatggtgtaccatcaccatc
agcactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGCGCCATGGGTTGTTTCGGAT 540 133 102 Antisense
AGAAATCTTCTCAAATCACTTACAT 31 73 133 Antisense
TGCAATGTCTTTCCATTCACTTCTA 332 577 165 Antisense
GGAGTTCAAGATTCTGATGCTGCCA 16 519 205 Antisense
GCCATTTGGACATTGTTCCTTTCTC 238 281 226 Antisense
GTCATGTGCACAATTCTCGTCTATG 409 467 328 Antisense
ATGCACTTATGACACCACTTGGATC 502 27 350 Antisense
AACCTTGCTACAGAACACCGGAGAT 231 147 384 Antisense
ACATTCCTTGAAATTCTTGCCGCAG 463 105 478 Antisense
GGTCATGGTCACGGACATCCAGATC 522 503 598 Antisense
TGGTGTACCATCACCATCAGCACTC 452 553 624 Antisense
Sequence Source Affymetrix Proprietary Database