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[178053_at]

Description F10A3.7 /REP_DB=WormBase Gene ID /WP=CE15773 /TR=O45341 /GB=CAB07346.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 40.6
(-3)
A 		53.1
(1.7)
A 		55.6
(2.6)
A 		56.7
(3)
A 		16
B 43
(-0.8)
A 		62.3
(3)
A 		32.1
(-3)
A 		33.5
(-2.7)
A 		30
C 19.7
(-3)
A 		57.7
(3)
A 		32.4
(-1)
A 		49.1
(1.6)
A 		38
avr 34.4
(-3) 		57.7
(3) 		40
(-1.6) 		46.4
(0.1) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 35.1
(2.1)
A 		3.7
(-3)
A 		14
(-1.3)
A 		40.4
(3)
A 		22.4
(0.1)
A 		22.2
(0)
A 		37
B 18.7
(-2.6)
A 		40.8
(1.4)
A 		21.8
(-2)
A 		31.7
(-0.3)
A 		16.3
(-3)
A 		50
(3)
A 		34
C 27.9
(-0.8)
A 		46.7
(3)
A 		36.7
(1)
A 		30.5
(-0.3)
A 		16.9
(-3)
A 		35.5
(0.7)
A 		30
avr 27.2
(0) 		30.4
(1.1) 		24.2
(-1) 		34.2
(2.4) 		18.5
(-3) 		35.9
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 14.8
(3)
A 		11.5
(-0)
A 		14.5
(2.7)
A 		8.3
(-3)
A 		7
B 13.7
(1.8)
A 		15.4
(3)
A 		7.4
(-2.8)
A 		7.1
(-3)
A 		8
C 6.5
(-3)
A 		16.6
(3)
A 		11.3
(-0.1)
A 		8.3
(-1.9)
A 		10
avr 11.7
(0.5) 		14.5
(3) 		11.1
(-0.1) 		7.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.5
(0.5)
A 		1.3
(-3)
A 		3
(-1.9)
A 		10.2
(3)
A 		6.8
(0.7)
A 		5.4
(-0.2)
A 		9
B 6.5
(-2.5)
A 		13.6
(0.7)
A 		5.3
(-3)
A 		8.4
(-1.6)
A 		6.6
(-2.4)
A 		18.6
(3)
A 		13
C 10.3
(0.3)
A 		14.3
(3)
A 		9.3
(-0.4)
A 		6.1
(-2.6)
A 		5.5
(-3)
A 		11.9
(1.4)
A 		9
avr 7.8
(-1.1) 		9.7
(0.7) 		5.9
(-3) 		8.2
(-0.7) 		6.3
(-2.6) 		12
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14217
Sequence Type Exemplar sequence
Representative Public ID F10A3.7 NCBI
Target Description F10A3.7 /REP_DB=WormBase Gene ID /WP=CE15773 /TR=O45341 /GB=CAB07346.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074668 NCBI Caenorhabditis elegans F10A3.7 (F10A3.7) mRNA, complete cds. 11/11 None
F10A3.7 ENSEMBL cdna:known chromosome:CEL140:V:16158195:16159305:-1 gene:F10A3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000096 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16158194-16159305(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10A3.7
Entrez Gene 184277 Entrez gene
SwissProt O45341 EMBL-EBI
WormBase CE15773 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07346 Hypothetical protein F10A3.7 [Caenorhabditis elegans] ref|NP_507069.1| F10A3.7 [Caenorhabditis elegans] 1.0E-125
blast CAB07344 Hypothetical protein F10A3.6 [Caenorhabditis elegans] ref|NP_507070.1| Seven TM Receptor family member (str-99) [Caenorhabditis elegans] 3.0E-84
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 3.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507069.1 4 9-31,46-63,96-118,138-160
F10A3.7 4 9-31,46-63,96-118,138-160
Sequence
Target Sequence 
>C. ELEGANS:178053_AT
tcggctttgtggtttccgagttcttaaactcgattcacttatttctgatcagcaaaatgt
caaaacagatgttcggaaactataagtatcttatgttttcattttcatcattcacaattg
tctattcatttgttaacttttggtgcaaaccggtagtaattaatgttcatattactgaaa
attcttctgtcgtctttactgttttgaaggaaaccggggttaccaaacaaataggagaaa
ttgcagttggattttattgttcatgttactacatcatgctcctgctgatcacaattcatt
tctactatcgttatctttccgtgaccagtccttctggtcttttaagattctcaaacaaaa
ctgctccaatctggatgttgttcatattttgtattgctttcctctggttcagtttgtgct
attttgtgaatgggccgtctccaatgaaaaatgagaatttttcaccggtatttcggaaaa
attactgtttggagccggaagaatacgcataccttggaccactgtttttctataaagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCTTTGTGGTTTCCGAGTTCTT 644 603 59 Antisense
AACTCGATTCACTTATTTCTGATCA 470 141 85 Antisense
TTCTTCTGTCGTCTTTACTGTTTTG 68 691 240 Antisense
CATGTTACTACATCATGCTCCTGCT 53 211 320 Antisense
ATGCTCCTGCTGATCACAATTCATT 331 43 334 Antisense
TTCCGTGACCAGTCCTTCTGGTCTT 675 697 375 Antisense
AACTGCTCCAATCTGGATGTTGTTC 58 143 417 Antisense
ATATTTTGTATTGCTTTCCTCTGGT 579 19 442 Antisense
TGAGAATTTTTCACCGGTATTTCGG 211 569 510 Antisense
AATACGCATACCTTGGACCACTGTT 289 173 560 Antisense
GGACCACTGTTTTTCTATAAAGACT 586 521 574 Antisense
Sequence Source Affymetrix Proprietary Database