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[178052_at]

Description T23F6.3 /REP_DB=WormBase Gene ID /WP=CE18962 /TR=Q9XU69 /GB=CAB05629.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.2
(-3)
A 		12.2
(0.3)
A 		13.2
(0.8)
A 		17.2
(3)
A 		11
B 17.7
(3)
A 		9.4
(-0.9)
A 		11
(-0.2)
A 		5
(-3)
A 		13
C 12.3
(0.5)
A 		16.9
(3)
A 		5.8
(-3)
A 		13.7
(1.3)
A 		11
avr 12.1
(1.5) 		12.8
(3) 		10
(-3) 		12
(1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 6.7
(-3)
A 		11.6
(-2.7)
A 		6.4
(-3)
A 		16.2
(-2.5)
A 		57.4
(-0.5)
A 		127.5
(3)
A 		121
B 20.6
(-2.4)
A 		9.8
(-3)
A 		20.5
(-2.4)
A 		11.7
(-2.9)
A 		82.4
(1)
A 		119.4
(3)
P 		110
C 15.2
(-2.5)
A 		17.2
(-2.4)
A 		4.9
(-3)
A 		9.9
(-2.7)
A 		120.9
(2.9)
A 		122
(3)
A 		117
avr 14.2
(-2.8) 		12.9
(-2.9) 		10.6
(-3) 		12.6
(-2.9) 		86.9
(1.1) 		123
(3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.2
(-3)
A 		2.7
(-0.7)
A 		3.5
(3)
A 		2.5
(-1.6)
A 		1
B 5.6
(3)
A 		2.3
(-1.4)
A 		2.6
(-1)
A 		1.1
(-3)
A 		5
C 4.1
(1.3)
A 		4.9
(3)
A 		2
(-3)
A 		2.3
(-2.4)
A 		3
avr 4
(3) 		3.3
(0.9) 		2.7
(-0.9) 		2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 1.2
(-3)
A 		4.1
(-2.4)
A 		1.4
(-3)
A 		4.1
(-2.4)
A 		17.3
(0.2)
A 		31
(3)
A 		30
B 7.2
(-2.4)
A 		3.3
(-3)
A 		5
(-2.7)
A 		3.1
(-3)
A 		33.5
(1.4)
A 		44.5
(3)
P 		41
C 5.6
(-2.3)
A 		5.2
(-2.4)
A 		1.2
(-3)
A 		2
(-2.9)
A 		39.1
(2.7)
A 		40.8
(3)
A 		40
avr 4.7
(-2.6) 		4.2
(-2.7) 		2.5
(-3) 		3.1
(-2.9) 		30
(1.5) 		38.8
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178052_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9504
Sequence Type Exemplar sequence
Representative Public ID T23F6.3 NCBI
Target Description T23F6.3 /REP_DB=WormBase Gene ID /WP=CE18962 /TR=Q9XU69 /GB=CAB05629.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070030 NCBI Caenorhabditis elegans T23F6.3 (T23F6.3) mRNA, complete cds. 11/11 None
SNAP00000000562 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12723123:12730530:-1 11/11 None
T23F6.3 ENSEMBL cdna:known chromosome:CEL140:IV:12723114:12724573:-1 gene:T23F6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000567 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12722974-12724567(-) 97.19 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F6.3
Entrez Gene 178228 Entrez gene
SwissProt Q9XU69 EMBL-EBI
WormBase CE30694 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05629 Hypothetical protein T23F6.3 [Caenorhabditis elegans] ref|NP_502431.2| T23F6.3 [Caenorhabditis elegans] 1.0E-138
blast CAB03425 Hypothetical protein T24D1.3 [Caenorhabditis elegans] ref|NP_492633.1| T24D1.3 [Caenorhabditis elegans] 2.0E-24
blast CAD01083 Hypothetical protein T24D1.5 [Caenorhabditis elegans] ref|NP_492632.1| T24D1.5 [Caenorhabditis elegans] 8.0E-24
blast CAD01083 Hypothetical protein T24D1.5 [Caenorhabditis elegans] ref|NP_492632.1| T24D1.5 [Caenorhabditis elegans] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:178052_AT
atcagccaacaatcagagccgcagctggaagagaaggttatggaggccacgtggacgttt
taccggccgttcttgcaagaaacttgccgtcacaaggaatcaatgaaaatgccataaccc
ttgatgatgacgaatctgaagtcaaattgtcagactcttttgaagctgctccatcgaatc
agccaagcacatcacaaggcacctcaaatcatgcagctcgagttggctcaccgatcggcg
cacggggagagtgtaccgtctgttttgagactccagttgacccacaaggctatgtgttca
aaggtggcaccgttcctctacccagccttcgtgtccactatgtcgccgtcgctggatcgc
cacacctgacgtatcacccatggaaatcatcaagtctcgacgtcaatcatttcgcctccg
tcagatacgagcaactcgtcgttctcattctcgtcaaccatattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGCCAACAATCAGAGCCGCAGC 704 27 389 Antisense
TGGAGGCCACGTGGACGTTTTACCG 442 547 429 Antisense
CAGACTCTTTTGAAGCTGCTCCATC 163 205 539 Antisense
AGGCACCTCAAATCATGCAGCTCGA 190 55 585 Antisense
CACCGATCGGCGCACGGGGAGAGTG 407 197 617 Antisense
TTTTGAGACTCCAGTTGACCCACAA 654 677 651 Antisense
TTCAAAGGTGGCACCGTTCCTCTAC 57 683 685 Antisense
AGTCTCGACGTCAATCATTTCGCCT 180 61 781 Antisense
TTCGCCTCCGTCAGATACGAGCAAC 64 697 799 Antisense
TACGAGCAACTCGTCGTTCTCATTC 25 649 814 Antisense
TTCTCATTCTCGTCAACCATATTGA 536 689 830 Antisense
Sequence Source Affymetrix Proprietary Database