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[178050_at]

Description F07C6.2 /REP_DB=WormBase Gene ID /WP=CE05563 /TR=Q19159 /GB=CAA93485.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 44      6grp_total > 56      4grp_total > 01      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 102.8
(0.4)
A 		13.9
(-3)
A 		101.7
(0.4)
M 		169.9
(3)
P 		156
B 56.4
(-3)
A 		68.8
(-2.5)
A 		78.4
(-2.1)
A 		205.1
(3)
P 		149
C 98.3
(-1.2)
A 		36.8
(-3)
A 		99.7
(-1.1)
M 		240.4
(3)
P 		204
avr 85.8
(-1.3) 		39.8
(-3) 		93.3
(-1.1) 		205.1
(3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 67.1
(-1.7)
M 		57.3
(-2.7)
A 		110.3
(3)
P 		73.6
(-1)
P 		54.9
(-3)
P 		88.5
(0.6)
P 		55
B 71.4
(-1.7)
P 		125.3
(3)
P 		115.5
(2.1)
A 		56.9
(-3)
A 		71.3
(-1.7)
P 		86.3
(-0.4)
P 		68
C 65.9
(-0.2)
P 		103.1
(1.8)
A 		10.6
(-3)
A 		66.9
(-0.1)
A 		62.5
(-0.3)
P 		127.4
(3)
P 		117
avr 68.1
(-2.2) 		95.2
(2.1) 		78.8
(-0.5) 		65.8
(-2.5) 		62.9
(-3) 		100.7
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 37.4
(3)
A 		3
(-3)
A 		26.6
(1.1)
M 		24.9
(0.8)
P 		34
B 18
(-2.8)
A 		17
(-3)
A 		18.2
(-2.7)
A 		43.7
(3)
P 		27
C 32.5
(1.4)
A 		10.6
(-3)
A 		34.7
(1.8)
M 		40.5
(3)
P 		30
avr 29.3
(1.4) 		10.2
(-3) 		26.5
(0.7) 		36.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 12.4
(-3)
M 		20.4
(1.1)
A 		24
(3)
P 		18.7
(0.3)
P 		16.6
(-0.8)
P 		21.5
(1.7)
P 		12
B 24.8
(-0.8)
P 		41.7
(3)
P 		28
(-0.1)
A 		15.1
(-3)
A 		29
(0.1)
P 		32.2
(0.9)
P 		27
C 24.4
(0.3)
P 		31.5
(1.3)
A 		2.7
(-3)
A 		13.4
(-1.4)
A 		20.2
(-0.4)
P 		42.6
(3)
P 		40
avr 20.5
(-1.2) 		31.2
(2.7) 		18.2
(-2.1) 		15.7
(-3) 		21.9
(-0.7) 		32.1
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9443
Sequence Type Exemplar sequence
Representative Public ID F07C6.2 NCBI
Target Description F07C6.2 /REP_DB=WormBase Gene ID /WP=CE05563 /TR=Q19159 /GB=CAA93485.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070038 NCBI Caenorhabditis elegans F07C6.2 (F07C6.2) mRNA, complete cds. 11/11 None
F07C6.2 ENSEMBL cdna:known chromosome:CEL140:IV:12791141:12791824:1 gene:F07C6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006494 7/11 Cross Hyb Matching Probes None
GENEFINDER00000006500 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12791146-12791830(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07C6.2
Entrez Gene 184137 Entrez gene
SwissProt Q19159 EMBL-EBI
WormBase CE05563 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93485 Hypothetical protein F07C6.2 [Caenorhabditis elegans] ref|NP_502439.1| F07C6.2 [Caenorhabditis elegans] 5.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502439.1 2 5-27,37-59
F07C6.2 2 5-27,37-59
Sequence
Target Sequence 
>C. ELEGANS:178050_AT
gttttgtgctgggaattggtcttgttcttatttgtacctccaccaacacagccgacgaag
actcggatttcaccaaaactacattcttggtacttttcatagttggatgcgttatgacat
taattggaggtcttggctatttttatacaatttacgaagttttacaaagagctcataaga
agttccgtgagcggcaattaaggaaattggagcaacaagttgttaggaggagaacagaga
caatggctagaactcgaacgattgcgttaacgatggaacgggaaaaggcaatgtcaatga
atggtggagggcctccgtttcatttgtgtttattgtgggtcctaattcgaattccttgtg
ctgcccagtatttgattcgctttcgtttggagattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGTGCTGGGAATTGGTCTTGT 416 447 38 Antisense
GGTCTTGTTCTTATTTGTACCTCCA 198 503 55 Antisense
CACCAACACAGCCGACGAAGACTCG 95 203 78 Antisense
GACTCGGATTTCACCAAAACTACAT 259 97 97 Antisense
AAACTACATTCTTGGTACTTTTCAT 243 127 113 Antisense
TGGAGGTCTTGGCTATTTTTATACA 679 547 162 Antisense
GTCAATGAATGGTGGAGGGCCTCCG 659 461 330 Antisense
GCCTCCGTTTCATTTGTGTTTATTG 117 283 348 Antisense
GGGTCCTAATTCGAATTCCTTGTGC 118 495 374 Antisense
GTGCTGCCCAGTATTTGATTCGCTT 300 479 395 Antisense
GATTCGCTTTCGTTTGGAGATTTTT 457 433 411 Antisense
Sequence Source Affymetrix Proprietary Database