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[178048_at]

Description F10A3.6 /REP_DB=WormBase Gene ID /WP=CE15772 /TR=O45339 /GB=CAB07344.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 10      6grp_cgc > 87      6grp_cgc_sub > 05      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 5.5
(-2.7)
A 		13.1
(-1.9)
A 		2.9
(-3)
A 		59.7
(3)
A 		57
B 5.6
(-2.7)
A 		6.2
(-2.6)
A 		2.5
(-3)
A 		56.8
(3)
A 		54
C 10.9
(-2.6)
A 		24.9
(-1.7)
A 		4.6
(-3)
A 		97.8
(3)
P 		93
avr 7.3
(-2.6) 		14.7
(-2) 		3.3
(-3) 		71.4
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 3.1
(-3)
A 		4.2
(-2.6)
A 		15.3
(1)
A 		15.3
(1)
A 		12.1
(-0)
A 		21.4
(3)
A 		18
B 3.2
(-3)
A 		25.2
(0.9)
A 		14.2
(-1.1)
A 		9.5
(-1.9)
A 		37.4
(3)
A 		4.4
(-2.8)
A 		34
C 22.8
(-0.3)
A 		6.5
(-2.5)
A 		4.2
(-2.8)
A 		47.2
(3)
A 		24.5
(-0.1)
A 		2.8
(-3)
A 		44
avr 9.7
(-2.9) 		12
(-2) 		11.2
(-2.3) 		24
(2.7) 		24.7
(3) 		9.5
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2
(-2.1)
A 		2.8
(-1.5)
A 		0.8
(-3)
A 		8.7
(3)
A 		8
B 1.8
(-2.4)
A 		1.5
(-2.5)
A 		0.6
(-3)
A 		12.1
(3)
A 		12
C 3.6
(-2.2)
A 		7.2
(-0.7)
A 		1.6
(-3)
A 		16.5
(3)
P 		15
avr 2.5
(-2.2) 		3.8
(-1.5) 		1
(-3) 		12.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.5
(-1.8)
A 		3.3
(0.5)
A 		3.9
(1.3)
A 		3.6
(0.9)
A 		5.2
(3)
A 		5
B 1.1
(-3)
A 		8.4
(0.1)
A 		3.4
(-2)
A 		2.5
(-2.4)
A 		15.2
(3)
A 		1.6
(-2.8)
A 		14
C 8.5
(2.3)
A 		2
(-2.2)
A 		1.1
(-2.9)
A 		9.5
(3)
A 		7.9
(1.9)
A 		0.9
(-3)
A 		9
avr 3.4
(-2.2) 		4
(-1.7) 		2.6
(-3) 		5.3
(-0.4) 		8.9
(3) 		2.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14327
Sequence Type Exemplar sequence
Representative Public ID F10A3.6 NCBI
Target Description F10A3.6 /REP_DB=WormBase Gene ID /WP=CE15772 /TR=O45339 /GB=CAB07344.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074669 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-99) (str-99) mRNA, complete cds. 11/11 None
SNAP00000000098 ENSEMBL cdna:SNAP chromosome:CEL140:V:16159918:16160457:-1 9/11 None
F10A3.6 ENSEMBL cdna:known chromosome:CEL140:V:16160002:16161074:-1 gene:F10A3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16160001-16161074(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-99
Ensembl F10A3.6
Entrez Gene 184276 Entrez gene
SwissProt O45339 EMBL-EBI
WormBase CE15772 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07344 Hypothetical protein F10A3.6 [Caenorhabditis elegans] ref|NP_507070.1| Seven TM Receptor family member (str-99) [Caenorhabditis elegans] 1.0E-169
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 2.0E-99
blast CAB04640 Hypothetical protein R08H2.13 [Caenorhabditis elegans] ref|NP_506822.1| Seven TM Receptor family member (str-102) [Caenorhabditis elegans] 7.0E-91
blast CAB07344 Hypothetical protein F10A3.6 [Caenorhabditis elegans] ref|NP_507070.1| Seven TM Receptor family member (str-99) [Caenorhabditis elegans] 2.0E-78
blast CAB04640 Hypothetical protein R08H2.13 [Caenorhabditis elegans] ref|NP_506822.1| Seven TM Receptor family member (str-102) [Caenorhabditis elegans] 1.0E-51
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 9.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.5E-43
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507070.1 7 5-27,39-61,91-113,134-156,202-224,254-276,286-308
F10A3.6 7 5-27,39-61,91-113,134-156,202-224,254-276,286-308
SNAP00000000098 3 29-51,81-103,113-135
Sequence
Target Sequence 
>C. ELEGANS:178048_AT
gtgacaagcccaactgatctttcgaggttctcggtcaaatctactccaatttggatactt
ttcataatttccatttctttcctctggttcagcatgtgctattttgtgaatgggccctct
ccaatgaaagatgagaattttttgccggaatttcagaaaaattactgtatggaaccggaa
gaatacaactacctgggacctcaatattactatcaggacgtaacagggcaaacacgattt
catattccttcattgttggcgtcgggtacgatgggagctctcatgtgctgctccatcagt
gcaatcacatactttggatttcatacctacaaacatcttgcaaatcttggaactattggt
agttctgagactggagatcttcagaaacaactctttagaacgctggtcattcaaacttta
attccgagcgtctttatgtatattccagtgtcatgtatgtttttatttcccttatttggc
ttgaaagccgaaggaattgataccttggttccaatttctgtggccatttatccgtgcttt
gaaccactagtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACAAGCCCAACTGATCTTTCGA 327 481 364 Antisense
GGTTCTCGGTCAAATCTACTCCAAT 641 505 389 Antisense
GAATACAACTACCTGGGACCTCAAT 343 325 544 Antisense
AAACACGATTTCATATTCCTTCATT 199 129 593 Antisense
GTTGGCGTCGGGTACGATGGGAGCT 371 435 618 Antisense
ACGATGGGAGCTCTCATGTGCTGCT 439 93 631 Antisense
TCATGTGCTGCTCCATCAGTGCAAT 451 619 644 Antisense
TTCCGAGCGTCTTTATGTATATTCC 421 699 785 Antisense
GTCATGTATGTTTTTATTTCCCTTA 350 467 813 Antisense
CAATTTCTGTGGCCATTTATCCGTG 255 181 875 Antisense
ATCCGTGCTTTGAACCACTAGTCGC 568 37 893 Antisense
Sequence Source Affymetrix Proprietary Database