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[178047_at]

Description F49C5.7 /REP_DB=WormBase Gene ID /WP=CE16084 /TR=O17881 /GB=CAB04435.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 52.7
(-1.7)
A 		69.1
(-0.9)
A 		27.1
(-3)
A 		146.9
(3)
M 		120
B 36.7
(-3)
A 		71.6
(0.8)
A 		49
(-1.6)
A 		91.3
(3)
A 		55
C 103.1
(1.8)
A 		46.6
(-3)
A 		58.5
(-2)
A 		117.7
(3)
P 		71
avr 64.2
(-1.4) 		62.4
(-1.6) 		44.9
(-3) 		118.6
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 44.2
(1.3)
A 		40.9
(-0.3)
A 		47.8
(3)
A 		42.5
(0.5)
A 		47.4
(2.8)
A 		35.2
(-3)
A 		13
B 13.3
(-2.4)
A 		52.2
(3)
A 		25.3
(-0.7)
A 		8.9
(-3)
A 		46.7
(2.2)
A 		46.5
(2.2)
A 		43
C 34.4
(-2.1)
A 		66.2
(3)
A 		45.5
(-0.3)
A 		45.9
(-0.2)
A 		53.7
(1)
A 		28.6
(-3)
A 		38
avr 30.6
(-3) 		53.1
(3) 		39.5
(-0.6) 		32.4
(-2.5) 		49.3
(2) 		36.8
(-1.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 19.2
(2)
A 		15
(0.3)
A 		7.1
(-3)
A 		21.5
(3)
M 		14
B 11.7
(-2.7)
A 		17.7
(1.7)
A 		11.3
(-3)
A 		19.5
(3)
A 		8
C 34.1
(3)
A 		13.4
(-3)
A 		20.4
(-1)
A 		19.8
(-1.1)
P 		21
avr 21.7
(3) 		15.4
(-1.3) 		12.9
(-3) 		20.3
(2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.1
(-3)
A 		14.5
(3)
A 		10.4
(-0.8)
A 		10.8
(-0.5)
A 		14.3
(2.8)
A 		8.6
(-2.5)
A 		6
B 4.6
(-2.2)
A 		17.4
(2.4)
A 		6.1
(-1.7)
A 		2.4
(-3)
A 		19
(3)
A 		17.3
(2.4)
A 		17
C 12.7
(-1.1)
A 		20.2
(3)
A 		11.6
(-1.7)
A 		9.2
(-3)
A 		17.4
(1.5)
A 		9.6
(-2.8)
A 		11
avr 8.5
(-2.4) 		17.4
(3) 		9.4
(-1.8) 		7.5
(-3) 		16.9
(2.7) 		11.8
(-0.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3680
Sequence Type Exemplar sequence
Representative Public ID F49C5.7 NCBI
Target Description F49C5.7 /REP_DB=WormBase Gene ID /WP=CE16084 /TR=O17881 /GB=CAB04435.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064281 NCBI Caenorhabditis elegans F49C5.7 (F49C5.7) mRNA, complete cds. 11/11 None
SNAP00000035417 ENSEMBL cdna:SNAP chromosome:CEL140:II:12564086:12568198:1 11/11 None
F49C5.7 ENSEMBL cdna:known chromosome:CEL140:II:12567174:12568198:1 gene:F49C5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035424 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12567170-12568195(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C5.7
Entrez Gene 186018 Entrez gene
SwissProt O17881 EMBL-EBI
WormBase CE16084 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04434 Hypothetical protein F49C5.6 [Caenorhabditis elegans] ref|NP_496681.1| Seven TM Receptor family member (str-223) [Caenorhabditis elegans] 1.0E-153
blast CAB04435 Hypothetical protein F49C5.7 [Caenorhabditis elegans] ref|NP_496682.1| F49C5.7 [Caenorhabditis elegans] 1.0E-114
blast AAB65377 Seven tm receptor protein 227 [Caenorhabditis elegans] ref|NP_503982.1| Seven TM Receptor family member (str-227) [Caenorhabditis elegans] 1.0E-109
blast NP_503369 Seven TM Receptor family member (str-224) [Caenorhabditis elegans] gb|AAC17674.2| Seven tm receptor protein 224 [Caenorhabditis elegans] 1.0E-105
blast AAB66040 Hypothetical protein C35A11.3 [Caenorhabditis elegans] ref|NP_504428.1| C35A11.3 [Caenorhabditis elegans] 1.0E-52
blast AAK84614 Hypothetical protein Y53G8AL.3 [Caenorhabditis elegans] ref|NP_497676.1| Y53G8AL.3 [Caenorhabditis elegans] 8.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.8E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.6E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000035417 6 10-32,45-64,96-118,159-181,212-234,241-263
Sequence
Target Sequence 
>C. ELEGANS:178047_AT
caacttccaatactgactcatcatcgactgcaactccttcaccttcctctgcctcgtcaa
ctactccgaccgctcagtcttcgactgctacatcacccgcaatgacgtcaccattcatcc
aaacaccggtattttataaaagcaagtgctttaccatcagttccaactttcaggctgcta
cacccaaacatcagttgtgcacaaagccgaaacaatctgccattacctggccaaactccc
tgtttcgaggaatgtgcatcgaaaaaccggtcactggacacgctttggctttccggtata
gaagtgatctggaaacacgcgactattcgaaggtcctaaccttcaagccaattgtgtttt
ttgagaagggaaggggcgagaaagatccacatgtctacttggaaaaccaccgaggcctga
acgtcttcttcgtctggtacaacaatgaaaagagtggagtgattttggatgccaatgagc
ctaacaactgcgccaacgaccaagctgattgtctaccatttgaatataacgacgtcaatg
ccatcatctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTTCCAATACTGACTCATCATC 535 187 155 Antisense
TCACCATTCATCCAAACACCGGTAT 82 627 262 Antisense
AAGCAAGTGCTTTACCATCAGTTCC 437 151 294 Antisense
TCAGTTCCAACTTTCAGGCTGCTAC 340 623 311 Antisense
ATCTGCCATTACCTGGCCAAACTCC 215 31 369 Antisense
GCCAAACTCCCTGTTTCGAGGAATG 411 275 384 Antisense
AAAACCGGTCACTGGACACGCTTTG 431 129 417 Antisense
GTCTTCTTCGTCTGGTACAACAATG 119 469 577 Antisense
GCCAATGAGCCTAACAACTGCGCCA 398 277 625 Antisense
GCGCCAACGACCAAGCTGATTGTCT 548 287 644 Antisense
TAACGACGTCAATGCCATCATCTAC 278 639 681 Antisense
Sequence Source Affymetrix Proprietary Database