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[178046_at]

Description W04G5.5 /REP_DB=WormBase Gene ID /WP=CE14590 /TR=O18170 /GB=CAB07682.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 4
(-2.8)
A 		3.4
(-3)
A 		9.9
(-0.7)
A 		20
(3)
A 		17
B 2.4
(-3)
A 		24.6
(3)
A 		5.2
(-2.2)
A 		3.7
(-2.6)
A 		22
C 5.2
(-2.7)
A 		26
(0.9)
A 		3.6
(-3)
A 		38.5
(3)
A 		35
avr 3.9
(-3) 		18
(2) 		6.2
(-2.2) 		20.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 4.9
(-3)
A 		30.2
(1.7)
A 		11.4
(-1.8)
A 		37.1
(3)
A 		23.3
(0.4)
A 		13.4
(-1.4)
A 		32
B 13.8
(0.8)
A 		8.1
(-1)
A 		2
(-3)
A 		2.8
(-2.7)
A 		2.9
(-2.7)
A 		20.6
(3)
A 		19
C 2.2
(-2.8)
A 		16.1
(0.9)
A 		1.3
(-3)
A 		24.2
(3)
A 		10.8
(-0.5)
A 		11.1
(-0.4)
A 		23
avr 7
(-2.2) 		18.1
(1.8) 		4.9
(-3) 		21.4
(3) 		12.3
(-0.3) 		15
(0.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-1.1)
A 		0.7
(-3)
A 		2.6
(2.2)
A 		2.9
(3)
A 		2
B 0.8
(-3)
A 		6.1
(3)
A 		1.2
(-2.5)
A 		0.8
(-3)
A 		5
C 1.7
(-2.6)
A 		7.5
(3)
A 		1.3
(-3)
A 		6.5
(2)
A 		6
avr 1.3
(-3) 		4.8
(3) 		1.7
(-2.3) 		3.4
(0.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.9
(-3)
A 		10.7
(3)
A 		2.5
(-2)
A 		9.4
(2.2)
A 		7
(0.7)
A 		3.3
(-1.5)
A 		10
B 4.8
(0.6)
A 		2.7
(-1.2)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		1.2
(-2.4)
A 		7.7
(3)
A 		7
C 0.8
(-2.3)
A 		4.9
(3)
A 		0.3
(-3)
A 		4.9
(3)
A 		3.5
(1.2)
A 		3.7
(1.4)
A 		5
avr 2.2
(-1.7) 		6.1
(3) 		1.1
(-3) 		5
(1.7) 		3.9
(0.4) 		4.9
(1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178046_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2492
Sequence Type Exemplar sequence
Representative Public ID W04G5.5 NCBI
Target Description W04G5.5 /REP_DB=WormBase Gene ID /WP=CE14590 /TR=O18170 /GB=CAB07682.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060566 NCBI Caenorhabditis elegans W04G5.5 (W04G5.5) mRNA, complete cds. 11/11 None
SNAP00000044252 ENSEMBL cdna:SNAP chromosome:CEL140:I:11642735:11649977:1 10/11 None
GENEFINDER00000044260 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11642735:11645117:1 10/11 None
W04G5.5 ENSEMBL cdna:known chromosome:CEL140:I:11642735:11644964:1 gene:W04G5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11642665-11644895(+) 97.8 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G5.5
Entrez Gene 189201 Entrez gene
SwissProt O18170 EMBL-EBI
WormBase CE14590 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07682 Hypothetical protein W04G5.5 [Caenorhabditis elegans] ref|NP_492967.1| W04G5.5 [Caenorhabditis elegans] 0.0
blast T26169 hypothetical protein W04G5.1 - Caenorhabditis elegans 0.0
blast NP_508643 T14G12.1 [Caenorhabditis elegans] gb|AAA82435.1| Hypothetical protein T14G12.1 [Caenorhabditis elegans] 0.0
blast NP_503046 C52D10.5 [Caenorhabditis elegans] gb|AAK77207.1| Hypothetical protein C52D10.5 [Caenorhabditis elegans] 0.0
blast CAB07682 Hypothetical protein W04G5.5 [Caenorhabditis elegans] ref|NP_492967.1| W04G5.5 [Caenorhabditis elegans] 1.0E-157
blast AAF59492 Hypothetical protein Y50D4B.7 [Caenorhabditis elegans] ref|NP_503374.1| Y50D4B.7 [Caenorhabditis elegans] 3.0E-29
blast AAF59492 Hypothetical protein Y50D4B.7 [Caenorhabditis elegans] ref|NP_503374.1| Y50D4B.7 [Caenorhabditis elegans] 8.0E-28
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 9.0E-23
Protein Domains
Database ID Description E-Value
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 0.00700000021606684
Pfam IPR001523 EMBL-EBI Paired box protein, N-terminal 8.0E-6
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.1E-35
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.6E-41
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.7E-23
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.6E-41
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.7E-23
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.6E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000044252 1 34-56
GENEFINDER00000044260 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:178046_AT
agcgagagcgaaagcctgtattggaaacgtaatgttgcttggcaattctcaaattttccg
aaccaattggaataaaggaaccgaaattgaaagtttcttagttagaatttatcctgatac
tcccgaagattccatttcaaacaaaacgttgggcaaactaatcgaacttcctttcaactc
tggagaagagtattcaaagtttacgtacgacatcattaatgatgtatactcacattcgcc
aaaagaagggttcatgtctcaagcttattatatggacaatattcaacgttgcgaagaacc
agatcatatcacggttcatttatgcaagatattcatggaaaaaaccgcaactatttcctg
gcactttgatttgcaatcttttggacaaccaattagaaaagtggaaattcgtataagtgg
atttgctgaatttagtcctgatgacagttatgcaatggcaaagtcatgcatagggaattt
ccaaaaagagaataaccaaattaaggtaatactgagtggcaatgctcaagttttccgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGAGAGCGAAAGCCTGTATTGGA 107 81 477 Antisense
GTTAGAATTTATCCTGATACTCCCG 472 445 577 Antisense
GATACTCCCGAAGATTCCATTTCAA 46 421 592 Antisense
TTGGGCAAACTAATCGAACTTCCTT 449 707 625 Antisense
TCGAACTTCCTTTCAACTCTGGAGA 40 601 638 Antisense
AATGATGTATACTCACATTCGCCAA 144 165 694 Antisense
GAAGGGTTCATGTCTCAAGCTTATT 565 335 721 Antisense
CCAGATCATATCACGGTTCATTTAT 170 273 775 Antisense
TATTTCCTGGCACTTTGATTTGCAA 185 663 828 Antisense
GATTTGCAATCTTTTGGACAACCAA 176 425 844 Antisense
GTGGCAATGCTCAAGTTTTCCGAAC 546 491 992 Antisense
Sequence Source Affymetrix Proprietary Database