[Home] | [Total List]

[178045_at]

Description F35H8.1 /REP_DB=WormBase Gene ID /WP=CE00979 /TR=Q20080 /GB=CAA85323.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 10
(-2.1)
A 		3.8
(-3)
A 		3.5
(-3)
A 		45.2
(3)
A 		42
B 3.6
(-3)
A 		6.7
(-2.5)
A 		5.2
(-2.7)
A 		40.6
(3)
A 		37
C 16.2
(-1.7)
A 		5.3
(-2.8)
A 		3.5
(-3)
A 		61.5
(3)
A 		58
avr 9.9
(-2.2) 		5.3
(-2.8) 		4.1
(-3) 		49.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 3.5
(-2.8)
A 		1.8
(-3)
A 		26.3
(0.6)
A 		25.9
(0.5)
A 		37.3
(2.2)
A 		43
(3)
A 		41
B 4.4
(-3)
A 		28.4
(-0.5)
A 		11.5
(-2.3)
A 		11.8
(-2.2)
A 		61.5
(3)
A 		36.1
(0.3)
A 		57
C 3
(-3)
A 		5.1
(-2.8)
A 		4
(-2.9)
A 		56.6
(3)
A 		32.7
(0.3)
A 		48.5
(2.1)
A 		54
avr 3.6
(-3) 		11.8
(-1.8) 		13.9
(-1.5) 		31.4
(1.1) 		43.8
(3) 		42.5
(2.8) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.7
(0)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		6.6
(3)
A 		6
B 1.1
(-3)
A 		1.7
(-2.5)
A 		1.2
(-2.9)
A 		8.6
(3)
A 		8
C 5.4
(-0.3)
A 		1.5
(-2.8)
A 		1.2
(-3)
A 		10.4
(3)
A 		9
avr 3.4
(-1.1) 		1.3
(-2.8) 		1.1
(-3) 		8.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.7
(-2.9)
A 		5.7
(-0.1)
A 		6.6
(0.4)
A 		11.2
(3)
A 		10.5
(2.6)
A 		11
B 1.5
(-3)
A 		9.5
(-1)
A 		2.8
(-2.7)
A 		3.1
(-2.6)
A 		25
(3)
A 		13.5
(0.1)
A 		24
C 1.1
(-3)
A 		1.5
(-2.8)
A 		1
(-3)
A 		11.4
(1.1)
A 		10.6
(0.8)
A 		16.3
(3)
A 		15
avr 1.1
(-3) 		3.9
(-1.8) 		3.2
(-2.1) 		7
(-0.6) 		15.6
(3) 		13.4
(2.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3531
Sequence Type Exemplar sequence
Representative Public ID F35H8.1 NCBI
Target Description F35H8.1 /REP_DB=WormBase Gene ID /WP=CE00979 /TR=Q20080 /GB=CAA85323.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063652
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063652 NCBI Caenorhabditis elegans F35H8.1 (F35H8.1) mRNA, complete cds. None
F35H8.1 ENSEMBL cdna:known chromosome:CEL140:II:9552573:9553162:-1 gene:F35H8.1 None
GENEFINDER00000035519 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9552573:9553162:-1 None
SNAP00000035507 ENSEMBL cdna:SNAP chromosome:CEL140:II:9552573:9553162:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9552723-9553159(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35H8.1
Entrez Gene 185324 Entrez gene
SwissProt Q20080 EMBL-EBI
WormBase CE35867 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85323 Hypothetical protein F35H8.1 [Caenorhabditis elegans] ref|NP_496053.2| F35H8.1 [Caenorhabditis elegans] 7.0E-86
blast CAA85323 Hypothetical protein F35H8.1 [Caenorhabditis elegans] ref|NP_496053.2| F35H8.1 [Caenorhabditis elegans] 5.0E-84
blast CAE71485 Hypothetical protein CBG18404 [Caenorhabditis briggsae] 4.0E-23
blast CAE71485 Hypothetical protein CBG18404 [Caenorhabditis briggsae] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:178045_AT
atgcgttatctttccaatttgctgtgcctaactctgacgtttatcgtttgctttggcgcc
gagcgcgatgcagatgaagaagcttatgtactgatgaatcttctgaaacaatctattgat
atggaccaaactgaagctcttccaggatttgtatcgagggatttcacatatgatacttgc
aagggaatttggaatagagataaatatatggagtatctgaaagtcttttcatctcgacca
gacggtggtatgcaaccaatgtccactgatgtacctttctatctttctaaactttggcat
ttgtattttaatttcagtggaaggttacaaatgcacatttcaacgacaatactcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTTATCTTTCCAATTTGCTGT 77 43 13 Antisense
CAATTTGCTGTGCCTAACTCTGACG 368 181 27 Antisense
TGACGTTTATCGTTTGCTTTGGCGC 139 571 47 Antisense
CTTTGGCGCCGAGCGCGATGCAGAT 150 213 63 Antisense
GGACCAAACTGAAGCTCTTCCAGGA 165 523 135 Antisense
GAAAGTCTTTTCATCTCGACCAGAC 687 359 231 Antisense
CATCTCGACCAGACGGTGGTATGCA 685 211 242 Antisense
GGTATGCAACCAATGTCCACTGATG 508 501 259 Antisense
AATGTCCACTGATGTACCTTTCTAT 677 161 270 Antisense
TGTACCTTTCTATCTTTCTAAACTT 163 559 282 Antisense
GCACATTTCAACGACAATACTCTTT 94 317 345 Antisense
Sequence Source Affymetrix Proprietary Database