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[178043_at]

Description F02H6.5 /REP_DB=WormBase Gene ID /WP=CE17629 /TR=O62133 /GB=CAB05173.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 74      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 97      6grp_total > 74      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 900
1 2 3 4 range
A 1527.7
(3)
P 		783.6
(-2.4)
P 		702.7
(-3)
P 		1072.4
(-0.3)
P 		825
B 1557.6
(3)
P 		790.1
(-2.1)
P 		657.7
(-3)
P 		1168.2
(0.4)
P 		900
C 1508.2
(3)
P 		673.4
(-3)
P 		693
(-2.9)
P 		1109.2
(0.1)
P 		835
avr 1531.2
(3) 		749
(-2.5) 		684.5
(-3) 		1116.6
(0.1) 		847

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 915
1 2 3 4 5 6 range
A 461
(-3)
P 		716.2
(-1.3)
P 		1132.8
(1.4)
P 		1375.6
(3)
P 		921.5
(0)
P 		1164.5
(1.6)
P 		915
B 714.7
(-3)
P 		882.3
(-1.1)
P 		1238.7
(3)
P 		1190.6
(2.4)
P 		933.9
(-0.5)
P 		1228.9
(2.9)
P 		524
C 613.8
(-3)
P 		771.7
(-1.5)
P 		1171.2
(2.3)
P 		1028.9
(1)
P 		917.3
(-0.1)
P 		1242.3
(3)
P 		629
avr 596.5
(-3) 		790.1
(-1.1) 		1180.9
(2.7) 		1198.4
(2.9) 		924.2
(0.2) 		1211.9
(3) 		615
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 556.2
(3)
P 		170.1
(-2.8)
P 		183.7
(-2.6)
P 		157
(-3)
P 		399
B 496.7
(3)
P 		195.1
(-2.3)
P 		152.4
(-3)
P 		248.9
(-1.3)
P 		344
C 499.3
(3)
P 		193.6
(-2.9)
P 		241.5
(-2)
P 		187
(-3)
P 		312
avr 517.4
(3) 		186.3
(-3) 		192.5
(-2.9) 		197.6
(-2.8) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 85
(-3)
P 		254.7
(0.9)
P 		246.7
(0.7)
P 		348.9
(3)
P 		278.1
(1.4)
P 		283.5
(1.5)
P 		264
B 248.7
(-3)
P 		293.7
(-1.7)
P 		300.8
(-1.5)
P 		315.3
(-1.1)
P 		379.4
(0.7)
P 		458.2
(3)
P 		210
C 227.5
(-2.4)
P 		235.5
(-2.2)
P 		298.1
(-0.4)
P 		206.9
(-3)
P 		296.8
(-0.4)
P 		415.9
(3)
P 		209
avr 187.1
(-3) 		261.3
(-0.8) 		281.9
(-0.1) 		290.4
(0.1) 		318.1
(1) 		385.9
(3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178043_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9150
Sequence Type Exemplar sequence
Representative Public ID F02H6.5 NCBI
Target Description F02H6.5 /REP_DB=WormBase Gene ID /WP=CE17629 /TR=O62133 /GB=CAB05173.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070328 NCBI Caenorhabditis elegans F02H6.5 (F02H6.5) mRNA, complete cds. 11/11 None
SNAP00000026626 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14220002:14224326:1 11/11 None
GENEFINDER00000026632 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14217981:14224326:1 11/11 None
F02H6.5 ENSEMBL cdna:known chromosome:CEL140:IV:14219869:14224688:1 gene:F02H6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14220007-14224332(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02H6.5
Entrez Gene 178374 Entrez gene
SwissProt O62133 EMBL-EBI
WormBase CE17629 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591725_AT similar to sulfide dehydrogenase like cfa
CANINE:1584159_AT similar to sulfide dehydrogenase like cfa
CANINE_2:CFA.13081.1.A1_S_AT similar to sulfide dehydrogenase like cfa
CANINE_2:CFAAFFX.21297.1.S1_AT similar to sulfide dehydrogenase like cfa
CANINE_2:CFAAFFX.21303.1.S1_AT similar to sulfide dehydrogenase like cfa
CANINE_2:CFAAFFX.21303.1.S1_S_AT similar to sulfide dehydrogenase like cfa
DROSOPHILA_2:1633558_S_AT dm
DROSGENOME1:151990_AT dm
CHICKEN:GGAAFFX.3582.1.S1_S_AT similar to Cg14997-prov protein gga
CHICKEN:GGAAFFX.3582.2.S1_AT similar to Cg14997-prov protein gga
HG-U133A:217995_AT sulfide quinone reductase-like (yeast) hs
HG-U133A_2:217995_AT sulfide quinone reductase-like (yeast) hs
HG-U133_PLUS_2:217995_AT sulfide quinone reductase-like (yeast) hs
HG-FOCUS:217995_AT sulfide quinone reductase-like (yeast) hs
HU35KSUBB:RC_W45353_AT sulfide quinone reductase-like (yeast) hs
HU35KSUBC:RC_W15319_AT sulfide quinone reductase-like (yeast) hs
U133_X3P:G10864010_3P_AT sulfide quinone reductase-like (yeast) hs
HG-U95B:46305_AT sulfide quinone reductase-like (yeast) hs
HU35KSUBC:RC_D20113_AT Sulfide quinone reductase-like (yeast) hs
MU11KSUBA:AA245216_S_AT sulfide quinone reductase-like (yeast) mm
MG-U74AV2:94515_AT sulfide quinone reductase-like (yeast) mm
MG-U74AV2:161733_AT sulfide quinone reductase-like (yeast) mm
MOE430A:1430998_AT sulfide quinone reductase-like (yeast) mm
MOUSE430A_2:1430998_AT sulfide quinone reductase-like (yeast) mm
MOUSE430_2:1430998_AT sulfide quinone reductase-like (yeast) mm
MOE430A:1420641_A_AT sulfide quinone reductase-like (yeast) mm
MOUSE430A_2:1420641_A_AT sulfide quinone reductase-like (yeast) mm
MOUSE430_2:1420641_A_AT sulfide quinone reductase-like (yeast) mm
Protein Similarities
Method ID Description E-Value
blast CAB05173 Hypothetical protein F02H6.5 [Caenorhabditis elegans] ref|NP_502729.1| F02H6.5 [Caenorhabditis elegans] 0.0
blast CAE71758 Hypothetical protein CBG18748 [Caenorhabditis briggsae] 0.0
blast CAE71757 Hypothetical protein CBG18746 [Caenorhabditis briggsae] 1.0E-177
blast CAE71757 Hypothetical protein CBG18746 [Caenorhabditis briggsae] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.0E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.5E-6
Sequence
Target Sequence 
>C. ELEGANS:178043_AT
gaattgccacgtttgagctgttggatgaggaggctaagccaactggaaaaactgagcaaa
ttgagtactccctattacacattggacccccttgctcaactccagaagctctccgcaatt
cggcatttgtcgataaaactggatttatggatgtggatggtgggtcattacagtccaaaa
aatacccgaatgtattcggagtgggtgattgtatgaatacgccaaacgcaaagactgctg
cagcagtttcatcgcatttgaagacaatcgagaagaatttgacacaagtcatgcagggta
atcggccatgtatgcagtacgatggctacgcgtcatgcccactggttgtgagcacaaatc
gtgtgatcctcgcagaatttggacctcgaggagccatggagacaactccatttgatcaat
cgaaacccacatattgggcatatttgatgaaaaggtatttcatgccagctctgtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGCCACGTTTGAGCTGTTGGA 64 325 875 Antisense
GTACTCCCTATTACACATTGGACCC 125 459 939 Antisense
GCTCTCCGCAATTCGGCATTTGTCG 13 301 982 Antisense
CTGCTGCAGCAGTTTCATCGCATTT 574 237 1109 Antisense
GGTAATCGGCCATGTATGCAGTACG 552 503 1171 Antisense
GCAGTACGATGGCTACGCGTCATGC 531 307 1188 Antisense
GTCATGCCCACTGGTTGTGAGCACA 356 467 1206 Antisense
GAGCACAAATCGTGTGATCCTCGCA 574 389 1224 Antisense
GATCCTCGCAGAATTTGGACCTCGA 97 417 1239 Antisense
TGGACCTCGAGGAGCCATGGAGACA 179 547 1254 Antisense
AGGTATTTCATGCCAGCTCTGTATT 650 57 1327 Antisense
Sequence Source Affymetrix Proprietary Database