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[178042_at]

Description W01B6.4 /REP_DB=WormBase Gene ID /WP=CE03756 /TR=Q23101 /GB=CAA92622.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 16      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 10.3
(-2.8)
A 		8.1
(-3)
A 		44
(-0.2)
A 		84.1
(3)
A 		76
B 12.4
(-2.6)
A 		36.8
(3)
A 		28.2
(1)
A 		10.8
(-3)
A 		26
C 10.8
(-2.8)
A 		8.5
(-3)
A 		9.8
(-2.9)
A 		87.4
(3)
P 		79
avr 11.2
(-3) 		17.8
(-2.2) 		27.3
(-1.1) 		60.8
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 30.3
(-0.2)
A 		16.9
(-1.7)
A 		41.1
(1)
A 		5.1
(-3)
A 		58.6
(3)
A 		48.9
(1.9)
P 		54
B 37.8
(-1.4)
A 		31.7
(-2.4)
A 		34.6
(-1.9)
A 		28.2
(-3)
A 		63.8
(3)
P 		40.7
(-0.9)
A 		36
C 3.1
(-3)
A 		40.3
(1)
A 		14.5
(-1.8)
A 		59.6
(3)
A 		35.7
(0.5)
A 		49.6
(1.9)
P 		57
avr 23.7
(-3) 		29.6
(-1.8) 		30.1
(-1.7) 		31
(-1.5) 		52.7
(3) 		46.4
(1.7) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.8
(-1.9)
A 		1.8
(-3)
A 		11.5
(2.5)
A 		12.3
(3)
A 		11
B 3.9
(-1.6)
A 		9.1
(3)
A 		6.5
(0.7)
A 		2.3
(-3)
A 		7
C 3.6
(-2.4)
A 		2.4
(-3)
A 		3.4
(-2.5)
A 		14.7
(3)
P 		12
avr 3.8
(-3) 		4.4
(-2.4) 		7.1
(0.3) 		9.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.6
(-1.4)
A 		6
(-1.3)
A 		8.9
(-0.2)
A 		1.3
(-3)
A 		17.7
(3)
A 		11.9
(0.9)
P 		16
B 13.2
(-1.1)
A 		10.6
(-2)
A 		8.4
(-2.7)
A 		7.5
(-3)
A 		25.9
(3)
P 		15.2
(-0.5)
A 		18
C 1.1
(-3)
A 		12.3
(1.3)
A 		3.7
(-2)
A 		12
(1.2)
A 		11.5
(1)
A 		16.6
(3)
P 		16
avr 6.6
(-3) 		9.6
(-1.5) 		7
(-2.8) 		6.9
(-2.8) 		18.4
(3) 		14.6
(1.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9162
Sequence Type Exemplar sequence
Representative Public ID W01B6.4 NCBI
Target Description W01B6.4 /REP_DB=WormBase Gene ID /WP=CE03756 /TR=Q23101 /GB=CAA92622.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069424 NCBI Caenorhabditis elegans W01B6.4 (W01B6.4) mRNA, complete cds. 11/11 None
W01B6.4 ENSEMBL cdna:known chromosome:CEL140:IV:10075432:10075623:1 gene:W01B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10075437-10075629(+) 100.0 100.0
chrIV:10079953-10080149(-) 94.27 94.27
Public Domain and Genome References
Gene Title
Ensembl W01B6.4
Entrez Gene 189081 Entrez gene
SwissProt Q23101 EMBL-EBI
WormBase CE03756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92622 Hypothetical protein W01B6.4 [Caenorhabditis elegans] ref|NP_501825.1| W01B6.4 [Caenorhabditis elegans] 2.0E-30
blast CAA92603 Hypothetical protein F44D12.7 [Caenorhabditis elegans] emb|CAA92601.1| Hypothetical protein F44D12.5 [Caenorhabditis elegans] emb|CAA92599.1| Hypothetical protein F44D12.3 [Caenorhabditis elegans] ref|NP_501811.1| F44D12.5 [Caenorhabditis elegans] ref|NP_501813.1| F44D12.7 [Caenorhabditis elegans] ref|NP_501808.1| F44D12.3 [Caenorhabditis elegans] ref|NP_498015.1| C35D10.11 [Caenorhabditis elegans] gb|AAA62567.1| Hypothetical protein C35D10.11 [Caenorhabditis elegans] 1.0E-13
blast CAA94274 Hypothetical protein K07F5.9 [Caenorhabditis elegans] ref|NP_501767.1| Sperm-Specific family, class P family member (ssp-10) [Caenorhabditis elegans] 9.0E-13
Sequence
Target Sequence 
>C. ELEGANS:178042_AT
ccaagctaccggaggttcctctacacacaaacttgtcagtgctggagctgagaagatgat
catcacacgaccagattttgttgatccacccggatccaaagacatctcgatcactcgtac
tgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAGCTACCGGAGGTTCCTCTACA 168 1 24 Antisense
TACCGGAGGTTCCTCTACACACAAA 112 649 30 Antisense
GTTCCTCTACACACAAACTTGTCAG 11 441 38 Antisense
TACACACAAACTTGTCAGTGCTGGA 112 643 45 Antisense
AAGATGATCATCACACGACCAGATT 399 155 76 Antisense
GATCATCACACGACCAGATTTTGTT 206 421 81 Antisense
CACACGACCAGATTTTGTTGATCCA 575 195 87 Antisense
GATTTTGTTGATCCACCCGGATCCA 642 429 97 Antisense
GATCCACCCGGATCCAAAGACATCT 523 415 106 Antisense
CACCCGGATCCAAAGACATCTCGAT 61 201 110 Antisense
AAGACATCTCGATCACTCGTACTGC 543 153 122 Antisense
Sequence Source Affymetrix Proprietary Database