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[178041_at]

Description F16C3.2 /REP_DB=WormBase Gene ID /WP=CE23665 /TR=Q9U3I9 /GB=CAB02967.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 63      6grp_total > 73      4grp_total > 47      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1654
1 2 3 4 range
A 1703.7
(3)
P 		370.1
(-3)
P 		487.6
(-2.5)
P 		538.5
(-2.2)
P 		1334
B 1392
(3)
P 		490.4
(-3)
P 		509
(-2.9)
P 		556.9
(-2.6)
P 		902
C 2024.1
(3)
P 		480.6
(-3)
P 		533.4
(-2.8)
P 		644.2
(-2.4)
P 		1544
avr 1706.6
(3) 		447
(-3) 		510
(-2.7) 		579.9
(-2.4) 		1260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 853
1 2 3 4 5 6 range
A 189.7
(-3)
P 		609.8
(1.4)
P 		712.2
(2.4)
P 		767.2
(3)
P 		691.9
(2.2)
P 		455.9
(-0.2)
P 		578
B 192.8
(-3)
P 		501.3
(0)
P 		751.6
(2.4)
P 		808.7
(3)
P 		740.1
(2.3)
P 		579.1
(0.8)
P 		616
C 185.6
(-3)
P 		484
(-0.9)
P 		648.3
(0.3)
P 		1039
(3)
P 		700
(0.6)
P 		658.6
(0.3)
P 		853
avr 189.4
(-3) 		531.7
(0) 		704
(1.5) 		871.6
(3) 		710.7
(1.6) 		564.5
(0.3) 		682
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 620.3
(3)
P 		80.3
(-3)
P 		127.5
(-2.5)
P 		78.8
(-3)
P 		542
B 443.9
(3)
P 		121.1
(-2.9)
P 		118
(-3)
P 		118.7
(-3)
P 		326
C 670
(3)
P 		138.2
(-2.7)
P 		185.9
(-2.2)
P 		108.6
(-3)
P 		561
avr 578.1
(3) 		113.2
(-2.9) 		143.8
(-2.5) 		102
(-3) 		476

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 35
(-3)
P 		216.9
(3)
P 		155.1
(1)
P 		194.6
(2.3)
P 		208.8
(2.7)
P 		111
(-0.5)
P 		182
B 67.1
(-3)
P 		166.8
(-0.4)
P 		182.5
(-0)
P 		214.2
(0.8)
P 		300.7
(3)
P 		216
(0.8)
P 		234
C 68.8
(-3)
P 		147.7
(0)
P 		165
(0.7)
P 		208.9
(2.3)
P 		226.5
(3)
P 		220.5
(2.8)
P 		158
avr 57
(-3) 		177.1
(0.8) 		167.5
(0.5) 		205.9
(1.7) 		245.3
(3) 		182.5
(1) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178041_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1019
Sequence Type Exemplar sequence
Representative Public ID F16C3.2 NCBI
Target Description F16C3.2 /REP_DB=WormBase Gene ID /WP=CE23665 /TR=Q9U3I9 /GB=CAB02967.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060272 NCBI Caenorhabditis elegans F16C3.2 (F16C3.2) mRNA, complete cds. 11/11 None
SNAP00000021301 ENSEMBL cdna:SNAP chromosome:CEL140:I:10158522:10161155:-1 11/11 None
GENEFINDER00000021303 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10158522:10162191:-1 11/11 None
F16C3.2 ENSEMBL cdna:known chromosome:CEL140:I:10158422:10163219:-1 gene:F16C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10158452-10163100(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16C3.2
Entrez Gene 172879 Entrez gene
SwissProt Q9U3I9 EMBL-EBI
WormBase CE23665 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02967 Hypothetical protein F16C3.2 [Caenorhabditis elegans] ref|NP_492673.1| F16C3.2 [Caenorhabditis elegans] 1.0E-176
blast CAB02967 Hypothetical protein F16C3.2 [Caenorhabditis elegans] ref|NP_492673.1| F16C3.2 [Caenorhabditis elegans] 1.0E-150
blast CAB02967 Hypothetical protein F16C3.2 [Caenorhabditis elegans] ref|NP_492673.1| F16C3.2 [Caenorhabditis elegans] 1.0E-140
blast CAE66843 Hypothetical protein CBG12214 [Caenorhabditis briggsae] 1.0E-138
blast CAE66843 Hypothetical protein CBG12214 [Caenorhabditis briggsae] 1.0E-121
blast CAE66843 Hypothetical protein CBG12214 [Caenorhabditis briggsae] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:178041_AT
gctctgagaaccatcgggcttaacaaattcttcgcagcttttgtcactttaccgcccgtt
gatatgaagaaagttgtgaactttgcgtgtgcgaaacacgagcagcaacttgaatgtggt
ctttattatgaaggagaagaaaaaactaatcaaagaattgctgaattaatgcaagatgga
gctaatagacaaatgttcgagcacgaatgtgtcgaagaggattatgcgacaagagtttat
ccatgtcttggacagactcagcaatggatgggttcttgtgaaaaggaaatctccgagtat
tcagttcttcgagaaaaagtgaataacaagatcaattcagtatataattcagcaattcaa
actgtgaaatctttaaaagagagaagagaacaagtattcacagacacaatgaagtttatc
aattatgcagaaggatcaaagtgtcttgcttttaaaaagatgcgtctatgtcttctcgag
caattggttaccgtgtgtggtgtccagaccgcccgtgctctaaacacaactctttcagtt
ggatacttggcttctgagagatcgattcgtcttcaacttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTGAGAACCATCGGGCTTAACA 336 299 316 Antisense
AATTCTTCGCAGCTTTTGTCACTTT 545 175 341 Antisense
TCACTTTACCGCCCGTTGATATGAA 286 625 359 Antisense
AGTTGTGAACTTTGCGTGTGCGAAA 157 65 387 Antisense
GACAGACTCAGCAATGGATGGGTTC 191 369 566 Antisense
GAAATCTCCGAGTATTCAGTTCTTC 319 363 601 Antisense
ATGCGTCTATGTCTTCTCGAGCAAT 694 41 775 Antisense
TGGTTACCGTGTGTGGTGTCCAGAC 123 551 800 Antisense
CCCGTGCTCTAAACACAACTCTTTC 165 257 827 Antisense
GTTGGATACTTGGCTTCTGAGAGAT 272 437 853 Antisense
GAGATCGATTCGTCTTCAACTTGAT 669 395 873 Antisense
Sequence Source Affymetrix Proprietary Database