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[178040_at]

Description F29G6.2 /REP_DB=WormBase Gene ID /WP=CE09792 /TR=Q93635 /GB=CAB01752.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      6grp_total > 32      4grp_total > 13      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 159.6
(1.3)
P 		24.5
(-3)
A 		68.3
(-1.6)
A 		211.4
(3)
P 		187
B 185
(1)
P 		124
(-1.2)
A 		76.7
(-3)
A 		237.7
(3)
P 		161
C 165.3
(0)
P 		63
(-2.7)
A 		52.5
(-3)
A 		277.3
(3)
P 		225
avr 170
(0.5) 		70.5
(-2.8) 		65.8
(-3) 		242.1
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 110.2
(0.8)
P 		94.9
(-0.4)
P 		138.9
(3)
P 		115.3
(1.2)
P 		81.4
(-1.5)
M 		61.7
(-3)
P 		77
B 89.4
(-2.9)
P 		95.5
(-2.2)
P 		143
(3)
P 		89.8
(-2.8)
P 		96.7
(-2.1)
P 		88.3
(-3)
P 		55
C 144.7
(0.8)
P 		185.2
(3)
P 		102.2
(-1.4)
P 		104
(-1.3)
P 		72.4
(-3)
A 		116.6
(-0.6)
P 		113
avr 114.8
(1.2) 		125.2
(2.6) 		128
(3) 		103
(-0.4) 		83.5
(-3) 		88.9
(-2.3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 58.1
(3)
P 		5.3
(-3)
A 		17.9
(-1.6)
A 		30.9
(-0.1)
P 		53
B 59
(3)
P 		30.6
(-1.1)
A 		17.8
(-3)
A 		50.7
(1.8)
P 		41
C 54.7
(3)
P 		18.1
(-3)
A 		18.3
(-3)
A 		46.8
(1.7)
P 		37
avr 57.3
(3) 		18
(-3) 		18
(-3) 		42.8
(0.8) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 20.3
(-1.3)
P 		33.7
(3)
P 		30.2
(1.9)
P 		29.2
(1.6)
P 		24.6
(0.1)
M 		15
(-3)
P 		19
B 31.1
(-0.2)
P 		31.8
(0.1)
P 		34.7
(1.2)
P 		23.8
(-3)
P 		39.3
(3)
P 		32.9
(0.5)
P 		16
C 53.6
(2.5)
P 		56.5
(3)
P 		26
(-2.1)
P 		20.9
(-3)
P 		23.4
(-2.6)
A 		39
(0.1)
P 		36
avr 35
(0.9) 		40.7
(3) 		30.3
(-0.9) 		24.6
(-3) 		29.1
(-1.3) 		29
(-1.4) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178040_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16195
Sequence Type Exemplar sequence
Representative Public ID F29G6.2 NCBI
Target Description F29G6.2 /REP_DB=WormBase Gene ID /WP=CE09792 /TR=Q93635 /GB=CAB01752.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077520 NCBI Caenorhabditis elegans F29G6.2 (F29G6.2) mRNA, complete cds. 11/11 None
SNAP00000010619 ENSEMBL cdna:SNAP chromosome:CEL140:X:11509383:11511265:-1 10/11 None
GENEFINDER00000010625 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11509383:11511265:-1 11/11 None
F29G6.2 ENSEMBL cdna:known chromosome:CEL140:X:11509383:11511265:-1 gene:F29G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11509382-11511265(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29G6.2
Entrez Gene 185121 Entrez gene
SwissProt Q93635 EMBL-EBI
WormBase CE09792 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25244.1.S1_S_AT similar to CG14868-PA cfa
CANINE_2:CFAAFFX.25248.1.S1_AT similar to CG14868-PA cfa
DROSOPHILA_2:1625817_AT dm
DROSGENOME1:142229_AT dm
U133_X3P:HS2.317625.1.S1_3P_S_AT hypothetical protein DKFZp761B107 hs
HG-U133_PLUS_2:1553839_AT hypothetical protein DKFZp761B107 hs
HG-U133_PLUS_2:1553840_A_AT hypothetical protein DKFZp761B107 hs
HG-U95B:47361_AT Hypothetical protein DKFZp761B107 hs
HU35KSUBA:RC_AA490318_S_AT Hypothetical protein DKFZp761B107 hs
HU35KSUBC:RC_AA365506_AT Hypothetical protein DKFZp761B107 hs
HU35KSUBC:RC_AA235174_AT Hypothetical protein DKFZp761B107 hs
HU35KSUBD:RC_R52679_AT Hypothetical protein DKFZp761B107 hs
U133_X3P:HS.106432.0.A2_3P_AT Hypothetical protein DKFZp761B107 hs
U133_X3P:HS.106432.0.A1_3P_X_AT Hypothetical protein DKFZp761B107 hs
U133_X3P:HS.106432.0.A1_3P_AT Hypothetical protein DKFZp761B107 hs
HG-U133_PLUS_2:226139_AT Hypothetical protein DKFZp761B107 hs
HG-U133B:226139_AT Hypothetical protein DKFZp761B107 hs
HG-U133_PLUS_2:226141_AT Hypothetical protein DKFZp761B107 hs
HG-U133B:226141_AT Hypothetical protein DKFZp761B107 hs
HG-U95B:49984_AT Hypothetical protein DKFZp761B107 hs
HG-U95C:57593_AT Hypothetical protein DKFZp761B107 hs
MG-U74BV2:106129_AT gene model 447, (NCBI) mm
Protein Similarities
Method ID Description E-Value
blast CAB01752 Hypothetical protein F29G6.2 [Caenorhabditis elegans] ref|NP_509921.1| F29G6.2 [Caenorhabditis elegans] 0.0
blast CAE70627 Hypothetical protein CBG17313 [Caenorhabditis briggsae] 1.0E-152
blast CAE70627 Hypothetical protein CBG17313 [Caenorhabditis briggsae] 1.0E-150
blast CAB01752 Hypothetical protein F29G6.2 [Caenorhabditis elegans] ref|NP_509921.1| F29G6.2 [Caenorhabditis elegans] 1.0E-134
blast CAE70627 Hypothetical protein CBG17313 [Caenorhabditis briggsae] 1.0E-103
blast BAC86142.1 unnamed protein product [Homo sapiens] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:178040_AT
gcaaaggtcttgaatcggatctccggtctatgcttggaatcaaagaagagctgctcatgg
aacgcgacgaaatgcagcggaaggtagcaagattgagcaacgagttgagttatttgttga
atggagatccgagaagggtggccgaagatttggacagtttagtggccgaaaaccggtttt
tgaaagccaaactaaacactgcagaagaagagagtgagtccataaaaatgacacttgcca
aatacaaacaaatggccgaagctgtaaatgtacagacgatggtgaatagatctccaaagg
ctggcgaaggagatgacaaaccaagtgtagcagtcatcaatatgaaacaaattcgtgagt
tgctagcttctcatgccatcgaactcgtcgagtccgattatcgtgcgataacaactattc
tgctcgatttgtgcaatgataagcaaatggcgttggcacactcacgtcgtgctaacaaag
tactgggaatgagattacatgaagttgaatcaaagcttgctgtattagatataaagtcaa
gaagttcaagtccgaggcatgaactccctcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAGGTCTTGAATCGGATCTCCG 374 317 494 Antisense
GGATCTCCGGTCTATGCTTGGAATC 200 513 510 Antisense
AGCTGCTCATGGAACGCGACGAAAT 299 81 542 Antisense
GGAGATCCGAGAAGGGTGGCCGAAG 290 519 616 Antisense
TGAGTTGCTAGCTTCTCATGCCATC 39 569 849 Antisense
CTCATGCCATCGAACTCGTCGAGTC 21 229 863 Antisense
ACTCGTCGAGTCCGATTATCGTGCG 668 97 876 Antisense
TCGTGCGATAACAACTATTCTGCTC 459 603 894 Antisense
AAGCAAATGGCGTTGGCACACTCAC 368 151 934 Antisense
GTTGGCACACTCACGTCGTGCTAAC 581 435 945 Antisense
GTCCGAGGCATGAACTCCCTCGAGA 710 475 1043 Antisense
Sequence Source Affymetrix Proprietary Database