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[178039_at]

Description F33H2.7 /REP_DB=WormBase Gene ID /WP=CE19831 /TR=Q9XV44 /GB=CAB04267.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_high_8_8 > 33      6grp_highest_nonorm > 90      6grp_total > 64      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 130.4
(3)
P 		124.1
(2.2)
P 		82.8
(-3)
P 		98.7
(-1)
A 		48
B 147.3
(3)
P 		90.9
(-1)
P 		95.9
(-0.7)
P 		63.7
(-3)
P 		84
C 141.7
(3)
P 		112.5
(-2.2)
P 		108.2
(-3)
P 		137.2
(2.2)
P 		34
avr 139.8
(3) 		109.2
(-1.2) 		95.6
(-3) 		99.9
(-2.4) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 65.8
(-3)
P 		96.3
(-1.5)
P 		185.2
(3)
P 		137.1
(0.6)
P 		91.9
(-1.7)
P 		104.3
(-1.1)
P 		119
B 153.6
(-0.7)
P 		120.8
(-3)
P 		205.5
(3)
P 		170
(0.5)
P 		122.8
(-2.9)
P 		202.4
(2.8)
P 		85
C 111.9
(-1.3)
P 		149.4
(1.1)
P 		136.4
(0.3)
P 		179.8
(3)
P 		84.5
(-3)
P 		170.8
(2.4)
P 		95
avr 110.4
(-2.2) 		122.2
(-1.2) 		175.7
(3) 		162.3
(1.9) 		99.7
(-3) 		159.2
(1.7) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 47.5
(3)
P 		26.9
(-0.7)
P 		21.7
(-1.7)
P 		14.4
(-3)
A 		33
B 47
(3)
P 		22.4
(-1.4)
P 		22.2
(-1.5)
P 		13.6
(-3)
P 		33
C 46.9
(3)
P 		32.3
(-0.7)
P 		37.7
(0.7)
P 		23.1
(-3)
P 		24
avr 47.1
(3) 		27.2
(-1) 		27.2
(-1) 		17
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 12.1
(-3)
P 		34.3
(1.7)
P 		40.3
(3)
P 		34.8
(1.8)
P 		27.7
(0.3)
P 		25.4
(-0.2)
P 		28
B 53.4
(-0.8)
P 		40.2
(-3)
P 		49.9
(-1.4)
P 		45
(-2.2)
P 		49.9
(-1.4)
P 		75.5
(3)
P 		35
C 41.5
(-0.2)
P 		45.6
(0.7)
P 		34.7
(-1.5)
P 		36.2
(-1.2)
P 		27.3
(-3)
P 		57.2
(3)
P 		30
avr 35.7
(-2.8) 		40
(-1.3) 		41.6
(-0.8) 		38.7
(-1.7) 		35
(-3) 		52.7
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.586
Sequence Type Exemplar sequence
Representative Public ID F33H2.7 NCBI
Target Description F33H2.7 /REP_DB=WormBase Gene ID /WP=CE19831 /TR=Q9XV44 /GB=CAB04267.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061219 NCBI Caenorhabditis elegans F33H2.7 (F33H2.7) mRNA, complete cds. 11/11 None
GENEFINDER00000009490 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:15035890:15041079:-1 11/11 None
F33H2.7 ENSEMBL cdna:known chromosome:CEL140:I:15035890:15038668:-1 gene:F33H2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15035820-15038599(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33H2.7
Entrez Gene 185237 Entrez gene
SwissProt Q9XV44 EMBL-EBI
WormBase CE34302 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04267 Hypothetical protein F33H2.7 [Caenorhabditis elegans] ref|NP_493620.2| F33H2.7 [Caenorhabditis elegans] 0.0
blast CAE72548 Hypothetical protein CBG19732 [Caenorhabditis briggsae] 1.0E-148
blast CAB04266 Hypothetical protein F33H2.8 [Caenorhabditis elegans] ref|NP_493621.2| F33H2.8 [Caenorhabditis elegans] 1.0E-139
blast NP_001013568 hypothetical protein LOC541423 [Danio rerio] gb|AAH91465.1| Zgc:110553 [Danio rerio] 3.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 6.8E-7
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 6.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009490 7 13-35,45-67,102-120,135-149,156-178,193-215,227-249
Sequence
Target Sequence 
>C. ELEGANS:178039_AT
tgcttccaacatccgaacgtcggaaaacaatccgcggagtccattttctgacgtgtcagt
gtgaaatgtgcaaaaatgaagaactggatctaatcgggttaagctcaaaatgtcgaacaa
aaaattgcacgggatttgtgaagggatctggaaactgttcagtttgtgagaaattagcgt
ttttgccctttgaacagagcatccattcaacattaaatcttttggatattattgaaaatc
tccataaaacaaatcaattcacaacagtacaagaattggcttaccttcaaaaactacgtg
ctgactatcaagacatcctggcggaatgcaacgtggcaattttgcaactcgacgagcaga
ttgcttattgtagcagttcactggaaaatgtgaatgacttggatttggacttgatcgctg
gaagaggcagtgagcattttataactcgtcttgggatcggcgctccagaagtgacccgtc
gtttgtatattggatgtaaatgtatatctcgtatttcaccatcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTTCCAACATCCGAACGTCGGAA 182 579 728 Antisense
AACAATCCGCGGAGTCCATTTTCTG 124 135 753 Antisense
GAGAAATTAGCGTTTTTGCCCTTTG 520 351 895 Antisense
TTGCCCTTTGAACAGAGCATCCATT 220 703 910 Antisense
TGCTGACTATCAAGACATCCTGGCG 333 583 1026 Antisense
CATCCTGGCGGAATGCAACGTGGCA 265 211 1041 Antisense
GTGGCAATTTTGCAACTCGACGAGC 378 491 1060 Antisense
GGATTTGGACTTGATCGCTGGAAGA 96 511 1128 Antisense
TATAACTCGTCTTGGGATCGGCGCT 482 657 1167 Antisense
AAGTGACCCGTCGTTTGTATATTGG 604 157 1196 Antisense
GTATATCTCGTATTTCACCATCGAA 39 455 1229 Antisense
Sequence Source Affymetrix Proprietary Database