[Home] | [Total List]

[178038_at]

Description T23F6.1 /REP_DB=WormBase Gene ID /WP=CE18960 /TR=Q9XU68 /GB=CAB05630.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 49      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 41.9
(-3)
A 		367.8
(2.3)
P 		413.9
(3)
P 		97.3
(-2.1)
A 		372
B 32.8
(-3)
A 		368.5
(3)
P 		365
(2.9)
P 		40.8
(-2.9)
A 		336
C 21.4
(-3)
P 		332.7
(3)
P 		319.3
(2.7)
P 		89.9
(-1.7)
A 		311
avr 32
(-3) 		356.3
(2.8) 		366.1
(3) 		76
(-2.2) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 130.2
(-3)
P 		216
(2.1)
P 		177.2
(-0.2)
P 		216.9
(2.1)
P 		220.7
(2.4)
P 		231.3
(3)
P 		101
B 88.4
(-3)
P 		213.1
(-0.3)
P 		169.1
(-1.3)
P 		191.9
(-0.8)
P 		258.5
(0.7)
P 		365.1
(3)
P 		277
C 94.9
(-3)
P 		267.1
(2.6)
P 		151.6
(-1.2)
P 		218.9
(1)
P 		262
(2.5)
P 		278.8
(3)
P 		184
avr 104.5
(-3) 		232.1
(1.1) 		166
(-1) 		209.2
(0.4) 		247.1
(1.6) 		291.7
(3) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 15.3
(-2.9)
A 		79.8
(1.2)
P 		108.2
(3)
P 		14.2
(-3)
A 		94
B 10.4
(-2.9)
A 		91
(3)
P 		84.6
(2.5)
P 		8.7
(-3)
A 		82
C 7.1
(-3)
P 		95.7
(2.1)
P 		111.3
(3)
P 		15.2
(-2.5)
A 		104
avr 10.9
(-3) 		88.8
(2.2) 		101.4
(3) 		12.7
(-2.9) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 24
(-3)
P 		76.8
(3)
P 		38.6
(-1.3)
P 		55
(0.5)
P 		66.6
(1.8)
P 		56.3
(0.7)
P 		53
B 30.8
(-3)
P 		70.9
(-0.7)
P 		41.1
(-2.4)
P 		50.8
(-1.9)
P 		105
(1.2)
P 		136.1
(3)
P 		105
C 35.2
(-3)
P 		81.5
(1.8)
P 		38.6
(-2.6)
P 		44
(-2.1)
P 		84.8
(2.1)
P 		93.3
(3)
P 		58
avr 30
(-3) 		76.4
(1.3) 		39.4
(-2.1) 		49.9
(-1.2) 		85.5
(2.1) 		95.2
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9124
Sequence Type Exemplar sequence
Representative Public ID T23F6.1 NCBI
Target Description T23F6.1 /REP_DB=WormBase Gene ID /WP=CE18960 /TR=Q9XU68 /GB=CAB05630.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070028 NCBI Caenorhabditis elegans T23F6.1 (T23F6.1) mRNA, complete cds. 11/11 None
SNAP00000000560 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12719967:12720865:1 11/11 None
GENEFINDER00000000568 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12719967:12720865:1 11/11 None
T23F6.1 ENSEMBL cdna:known chromosome:CEL140:IV:12719967:12720865:1 gene:T23F6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12719972-12720871(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F6.1
Entrez Gene 178227 Entrez gene
SwissProt Q9XU68 EMBL-EBI
WormBase CE18960 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05630 Hypothetical protein T23F6.1 [Caenorhabditis elegans] ref|NP_502429.1| T23F6.1 [Caenorhabditis elegans] 1.0E-11
Sequence
Target Sequence 
>C. ELEGANS:178038_AT
ttcatttgctttaatcttccttttcaatattgcctcggcatccattttttctgatgatgt
cacagaggctacaagtagcccagatactaccacaactgcagttgcaattagagccaagag
acagtgcggtggaatgggtggatgttgtggaggaatgagtggatgcggatgtggatctat
gggaatgtgtgggcagacatgttgcccatcagccccaccaccatgctcatgtggaactcc
gggatgtatgcaatgtgttcaacagacggttcttgttccagtcaccactacaacctgctg
caaatgttgccagccagtgtgcaccaatgcttgcactaatggaggaggatgctcgtgtgg
atgtactcgtggtggatgctccagaaagagacgttcccttttggcaattgctagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTTGCTTTAATCTTCCTTTTC 431 689 45 Antisense
CTTCCTTTTCAATATTGCCTCGGCA 610 217 60 Antisense
TAGCCCAGATACTACCACAACTGCA 560 649 120 Antisense
GGGCAGACATGTTGCCCATCAGCCC 367 489 235 Antisense
CCCCACCACCATGCTCATGTGGAAC 99 263 257 Antisense
GGAACTCCGGGATGTATGCAATGTG 42 531 277 Antisense
TCAACAGACGGTTCTTGTTCCAGTC 38 629 303 Antisense
CACCACTACAACCTGCTGCAAATGT 181 203 327 Antisense
AAATGTTGCCAGCCAGTGTGCACCA 549 119 346 Antisense
GTGGATGTACTCGTGGTGGATGCTC 67 491 401 Antisense
ACGTTCCCTTTTGGCAATTGCTAGT 73 95 435 Antisense
Sequence Source Affymetrix Proprietary Database