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[178037_at]

Description T15D6.8 /REP_DB=WormBase Gene ID /WP=CE13694 /TR=Q9XU72 /GB=CAB05618.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 4.1
(-2.9)
A 		3.6
(-3)
A 		11.4
(-1.3)
A 		31.4
(3)
A 		28
B 14.5
(-1.1)
A 		9.3
(-2)
A 		2.5
(-3)
A 		41.4
(3)
A 		39
C 1.2
(-3)
A 		2.6
(-2.7)
A 		3.9
(-2.5)
A 		33.4
(3)
A 		32
avr 6.6
(-2.7) 		5.2
(-3) 		5.9
(-2.9) 		35.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2.9
(-2.5)
A 		21.2
(3)
A 		4.3
(-2.1)
A 		3.2
(-2.4)
A 		5
(-1.9)
A 		20
B 11.5
(3)
A 		5.3
(-0.8)
A 		3.7
(-1.8)
A 		1.8
(-3)
A 		2.1
(-2.8)
A 		2.1
(-2.8)
A 		10
C 4.3
(0.6)
A 		6.8
(3)
A 		2.6
(-1)
A 		5.2
(1.5)
A 		4.3
(0.6)
A 		0.5
(-3)
A 		6
avr 5.7
(-0.1) 		5
(-0.8) 		9.2
(3) 		3.8
(-1.8) 		3.2
(-2.4) 		2.5
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-1.9)
A 		0.8
(-3)
A 		3
(0.5)
A 		4.6
(3)
A 		4
B 4.6
(-0.1)
A 		2.3
(-1.8)
A 		0.6
(-3)
A 		8.8
(3)
A 		8
C 0.4
(-3)
A 		0.8
(-2.5)
A 		1.4
(-1.8)
A 		5.6
(3)
A 		5
avr 2.2
(-1.9) 		1.3
(-3) 		1.7
(-2.5) 		6.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.2
(-3)
A 		1
(-1.9)
A 		4.6
(3)
A 		1.1
(-1.8)
A 		1
(-1.9)
A 		1.2
(-1.6)
A 		4
B 4
(3)
A 		1.8
(-0.8)
A 		0.9
(-2.3)
A 		0.5
(-3)
A 		0.9
(-2.3)
A 		0.8
(-2.5)
A 		4
C 1.6
(1.4)
A 		2.1
(3)
A 		0.7
(-1.4)
A 		1.1
(-0.2)
A 		1.4
(0.8)
A 		0.2
(-3)
A 		2
avr 1.9
(2.1) 		1.6
(0.9) 		2.1
(3) 		0.9
(-2.1) 		1.1
(-1.3) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1415
Sequence Type Exemplar sequence
Representative Public ID T15D6.8 NCBI
Target Description T15D6.8 /REP_DB=WormBase Gene ID /WP=CE13694 /TR=Q9XU72 /GB=CAB05618.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060738(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060738 NCBI Caenorhabditis elegans T15D6.8 (T15D6.8) mRNA, complete cds. 11/11 None
SNAP00000012747 ENSEMBL cdna:SNAP chromosome:CEL140:I:12397881:12404399:1 11/11 None
GENEFINDER00000012758 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12397881:12399100:1 11/11 None
T15D6.8 ENSEMBL cdna:known chromosome:CEL140:I:12397881:12399100:1 gene:T15D6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12397811-12399031(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15D6.8
Entrez Gene 188534 Entrez gene
SwissProt Q9XU72 EMBL-EBI
WormBase CE13694 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05618 Hypothetical protein T15D6.8 [Caenorhabditis elegans] ref|NP_493139.1| T15D6.8 [Caenorhabditis elegans] 0.0
blast CAB05623 Hypothetical protein T15D6.10 [Caenorhabditis elegans] ref|NP_493141.1| T15D6.10 [Caenorhabditis elegans] 0.0
blast AAB94266 Hypothetical protein C14C6.8 [Caenorhabditis elegans] ref|NP_503243.2| C14C6.8 [Caenorhabditis elegans] 0.0
blast CAB05624 Hypothetical protein T15D6.11 [Caenorhabditis elegans] ref|NP_493142.1| T15D6.11 [Caenorhabditis elegans] 1.0E-151
blast CAB05624 Hypothetical protein T15D6.11 [Caenorhabditis elegans] ref|NP_493142.1| T15D6.11 [Caenorhabditis elegans] 1.0E-149
blast CAE69125 Hypothetical protein CBG15151 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.0E-49
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.0E-49
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493139.1 1 3-25
T15D6.8 1 3-25
SNAP00000012747 1 3-25
GENEFINDER00000012758 1 3-25
Sequence
Target Sequence 
>C. ELEGANS:178037_AT
gaatatccttgtgacactcggcgttggacatgacactactgctgaggaactgttcaaccg
aacacttcccaacacaattttttacggagccgacccgattattgagccaaacaggcagat
gtactcagcatttgggaagttcttcccatttgctattggaaaagaacctggctttacgaa
gttccgggtgcttccgaaccaaaatcaaaagacacggaagtacatttaccaggatgttac
tacaattccatttttgtattttttgcatgatattttgaagttaaagaaaatcgactttgc
atggatagacattgaaggcggggagtttgaattcctcgacaaattccatcgcgacgttca
aatttgtcaattcaatatagaaattcactcaacatttgcaccgacacaagcccaggcgtt
ccatgatttcattttcagggtgttggaagaacagaagtatgtattcttgaagccaatgca
cacccaggctggagttcatcgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATCCTTGTGACACTCGGCGTT 84 327 477 Antisense
TTGTGACACTCGGCGTTGGACATGA 274 709 485 Antisense
GGACATGACACTACTGCTGAGGAAC 113 525 502 Antisense
GAACTGTTCAACCGAACACTTCCCA 246 347 523 Antisense
GCCGACCCGATTATTGAGCCAAACA 301 285 565 Antisense
GCCAAACAGGCAGATGTACTCAGCA 558 277 582 Antisense
TACTCAGCATTTGGGAAGTTCTTCC 586 645 598 Antisense
TGGCTTTACGAAGTTCCGGGTGCTT 194 535 645 Antisense
GGCGTTCCATGATTTCATTTTCAGG 584 541 891 Antisense
ATTCTTGAAGCCAATGCACACCCAG 226 11 939 Antisense
CACCCAGGCTGGAGTTCATCGAATG 694 199 957 Antisense
Sequence Source Affymetrix Proprietary Database