[Home] | [Total List]

[178035_at]

Description C36E8.2 /REP_DB=WormBase Gene ID /WP=CE00910 /TR=O62089 /GB=CAA84649.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 50      6grp_total > 27      4grp_total > 11      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1060
1 2 3 4 range
A 720
(-1.9)
P 		537.9
(-3)
P 		546.8
(-2.9)
P 		1549.7
(3)
P 		1012
B 629.2
(-3)
P 		808.6
(-1.3)
P 		683.2
(-2.5)
P 		1273.9
(3)
P 		645
C 673.2
(-1.2)
P 		691.8
(-1)
P 		489.4
(-3)
P 		1094.6
(3)
P 		605
avr 674.1
(-2.2) 		679.4
(-2.1) 		573.1
(-3) 		1306.1
(3) 		733

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 753.5
(3)
P 		714.8
(2.4)
P 		348.5
(-3)
P 		455.7
(-1.4)
P 		523.7
(-0.4)
P 		459.1
(-1.4)
P 		405
B 765.1
(3)
P 		603.7
(0.1)
P 		432.9
(-3)
P 		453.2
(-2.6)
P 		521.1
(-1.4)
P 		509.4
(-1.6)
P 		332
C 802.4
(3)
P 		586.9
(-0)
P 		506.3
(-1.1)
P 		399.5
(-2.6)
P 		371.5
(-3)
P 		650.4
(0.9)
P 		431
avr 773.7
(3) 		635.1
(0.6) 		429.2
(-3) 		436.1
(-2.9) 		472.1
(-2.3) 		539.6
(-1.1) 		345
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 262.1
(3)
P 		116.8
(-3)
P 		142.9
(-1.9)
P 		226.8
(1.5)
P 		145
B 200.6
(-0.8)
P 		199.7
(-0.8)
P 		158.3
(-3)
P 		271.5
(3)
P 		113
C 222.9
(3)
P 		198.9
(0.2)
P 		170.6
(-3)
P 		184.6
(-1.4)
P 		52
avr 228.5
(3) 		171.8
(-1.8) 		157.3
(-3) 		227.6
(2.9) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 138.9
(-0.9)
P 		254.2
(3)
P 		75.9
(-3)
P 		115.6
(-1.7)
P 		158
(-0.2)
P 		111.8
(-1.8)
P 		178
B 266.2
(3)
P 		200.9
(0.6)
P 		105.1
(-3)
P 		120
(-2.4)
P 		211.7
(1)
P 		190
(0.2)
P 		161
C 297.4
(3)
P 		179.1
(-0.3)
P 		128.9
(-1.7)
P 		80.3
(-3)
P 		120.2
(-1.9)
P 		217.7
(0.8)
P 		217
avr 234.2
(3) 		211.4
(2) 		103.3
(-3) 		105.3
(-2.9) 		163.3
(-0.2) 		173.2
(0.2) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6558
Sequence Type Exemplar sequence
Representative Public ID C36E8.2 NCBI
Target Description C36E8.2 /REP_DB=WormBase Gene ID /WP=CE00910 /TR=O62089 /GB=CAA84649.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065401(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065401 NCBI Caenorhabditis elegans C36E8.2 (C36E8.2) mRNA, complete cds. 9/11 None
GENEFINDER00000019691 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3989473:3992138:-1 9/11 None
SNAP00000019684 ENSEMBL cdna:SNAP chromosome:CEL140:III:3989712:3990716:-1 9/11 None
C36E8.2 ENSEMBL cdna:known chromosome:CEL140:III:3989350:3992150:-1 gene:C36E8.2 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3989711-3992138(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36E8.2
Entrez Gene 175516 Entrez gene
SwissProt O62089 EMBL-EBI
WormBase CE30888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84649 Hypothetical protein C36E8.2 [Caenorhabditis elegans] ref|NP_497802.2| C36E8.2 [Caenorhabditis elegans] 1.0E-119
blast CAA84649 Hypothetical protein C36E8.2 [Caenorhabditis elegans] ref|NP_497802.2| C36E8.2 [Caenorhabditis elegans] 6.0E-97
blast CAE60102 Hypothetical protein CBG03635 [Caenorhabditis briggsae] 9.0E-90
blast CAE60102 Hypothetical protein CBG03635 [Caenorhabditis briggsae] 3.0E-89
blast CAA84649 Hypothetical protein C36E8.2 [Caenorhabditis elegans] ref|NP_497802.2| C36E8.2 [Caenorhabditis elegans] 1.0E-78
blast CAE60102 Hypothetical protein CBG03635 [Caenorhabditis briggsae] 3.0E-74
blast CAA92187 Hypothetical protein R01E6.6 [Caenorhabditis elegans] ref|NP_510267.1| R01E6.6 [Caenorhabditis elegans] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:178035_AT
gtccatcaatctcttcccaaggaaatcgaaaaccaattttatcagttaatcaacgacaaa
ttatcaaaggatgtatggacaattcaaaggatgatcttggagaaagaatattccgtcgag
cacttgaacgaagggatgattttaagcaatttattgataatttgagcaaaggacagagat
atgaaaactcacaatatttgaaacaatttttgttgggaattgttgagaatataatggata
ttgatgagattaataggtacggttttctggtaaaaaggaagttttttaaagttttccctt
gcagaatatctgaagaattcgggtgtaaccatgttcaattccgtgccaacggttttaaac
cggacttcttccgtgtaccgccgacgccgttaccaccgaatgcacattcttggatcaggc
tgctcatccgacaagtgaaactgccgccgcatggtctttgctcacatcgcatgtcttttc
ggcgatactacgcggagcttcgtcgccagcgaaagagcagtaacgcattccgagcccgtg
tttcagtagatgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCATCAATCTCTTCCCAAGGAAA 428 475 101 Antisense
GAATATTCCGTCGAGCACTTGAACG 528 325 206 Antisense
AAGTTTTCCCTTGCAGAATATCTGA 315 155 389 Antisense
CCATGTTCAATTCCGTGCCAACGGT 274 267 429 Antisense
GAATGCACATTCTTGGATCAGGCTG 592 327 498 Antisense
AGGCTGCTCATCCGACAAGTGAAAC 585 53 517 Antisense
CATGGTCTTTGCTCACATCGCATGT 689 209 550 Antisense
GCATGTCTTTTCGGCGATACTACGC 490 307 569 Antisense
GGAGCTTCGTCGCCAGCGAAAGAGC 198 519 594 Antisense
AAAGAGCAGTAACGCATTCCGAGCC 75 123 612 Antisense
CCGAGCCCGTGTTTCAGTAGATGTA 48 265 630 Antisense
Sequence Source Affymetrix Proprietary Database