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[178034_s_at]

Description K08C9.1 /REP_DB=WormBase Gene ID /WP=CE18858 /TR=Q9XUT5 /GB=CAB04586.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 13.2
(-3)
A 		25.6
(0)
A 		26.1
(0.1)
A 		38
(3)
A 		25
B 23.4
(-1)
A 		56.1
(3)
A 		6.5
(-3)
A 		38.2
(0.8)
A 		50
C 27.1
(-0.7)
A 		54.3
(3)
A 		10.5
(-3)
A 		40.8
(1.2)
A 		44
avr 21.2
(-1.7) 		45.3
(3) 		14.4
(-3) 		39
(1.8) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 24
(-1)
A 		4.5
(-2.9)
A 		3
(-3)
A 		27.4
(-0.7)
A 		66.2
(3)
A 		54.7
(1.9)
A 		63
B 28.7
(-2.8)
A 		41.5
(-0.4)
A 		27.9
(-3)
A 		29.6
(-2.7)
A 		38.4
(-1)
A 		59
(3)
M 		31
C 16.5
(-2.8)
A 		33.2
(-1.3)
A 		14.9
(-3)
A 		28.3
(-1.7)
A 		78
(3)
A 		75.5
(2.8)
A 		63
avr 23.1
(-2) 		26.4
(-1.6) 		15.3
(-3) 		28.4
(-1.4) 		60.9
(2.7) 		63.1
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.8
(-3)
A 		5.6
(-0.6)
A 		6.8
(3)
A 		5.6
(-0.6)
A 		2
B 7.5
(-0.1)
A 		13.8
(3)
A 		1.5
(-3)
A 		8.2
(0.3)
A 		12
C 9
(-0.3)
A 		15.6
(3)
A 		3.6
(-3)
A 		6.9
(-1.4)
A 		12
avr 7.1
(-0.6) 		11.7
(3) 		4
(-3) 		6.9
(-0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.4
(-1.8)
A 		1.6
(-2.7)
A 		0.7
(-3)
A 		6.9
(-1.1)
A 		20
(3)
A 		13.3
(0.9)
A 		19
B 10
(-1.7)
A 		13.8
(-0.2)
A 		6.8
(-3)
A 		7.8
(-2.6)
A 		15.6
(0.5)
A 		22
(3)
M 		15
C 6.1
(-2.4)
A 		10.1
(-1.2)
A 		3.8
(-3)
A 		5.7
(-2.5)
A 		25.2
(3)
A 		25.3
(3)
A 		22
avr 6.8
(-1.9) 		8.5
(-1.3) 		3.8
(-3) 		6.8
(-1.9) 		20.3
(3) 		20.2
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178034_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2239
Sequence Type Exemplar sequence
Representative Public ID K08C9.1 NCBI
Target Description K08C9.1 /REP_DB=WormBase Gene ID /WP=CE18858 /TR=Q9XUT5 /GB=CAB04586.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060533 NCBI Caenorhabditis elegans K08C9.1 (K08C9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000013584 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11492914:11494532:-1 10/11 None
SNAP00000013575 ENSEMBL cdna:SNAP chromosome:CEL140:I:11493188:11496517:-1 10/11 None
K08C9.1 ENSEMBL cdna:known chromosome:CEL140:I:11492942:11494593:-1 gene:K08C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11492891-11494463(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08C9.1
Entrez Gene 173034 Entrez gene
SwissProt Q9XUT5 EMBL-EBI
WormBase CE18858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04586 Hypothetical protein K08C9.1 [Caenorhabditis elegans] ref|NP_492934.1| K08C9.1 [Caenorhabditis elegans] 1.0E-140
blast CAB04586 Hypothetical protein K08C9.1 [Caenorhabditis elegans] ref|NP_492934.1| K08C9.1 [Caenorhabditis elegans] 1.0E-133
blast CAB04586 Hypothetical protein K08C9.1 [Caenorhabditis elegans] ref|NP_492934.1| K08C9.1 [Caenorhabditis elegans] 1.0E-132
blast CAB04585 Hypothetical protein K08C9.2 [Caenorhabditis elegans] ref|NP_492935.1| K08C9.2 [Caenorhabditis elegans] 1.0E-129
blast CAE74722 Hypothetical protein CBG22538 [Caenorhabditis briggsae] 3.0E-77
blast CAE74721 Hypothetical protein CBG22537 [Caenorhabditis briggsae] 2.0E-61
blast CAE74721 Hypothetical protein CBG22537 [Caenorhabditis briggsae] 9.0E-56
blast CAB04585 Hypothetical protein K08C9.2 [Caenorhabditis elegans] ref|NP_492935.1| K08C9.2 [Caenorhabditis elegans] 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:178034_S_AT
aacccgatgtaccaagtgggcttcgaattgaaaaaaccgatggttgttccggcggccgaa
ggtgatttccacaacactatgattttggtggacaatttgcgtacaggcaacagggatagt
tataaatacgcaatgattggcgttatccttctcgacggcgtcttcacattttccggaatc
gaggaaacgtacattccaaacttggaaaaaagcgggtcaaacttttgtatgccgttcaaa
ggaatcaatgtcgtgaagaagtgcaatatggagtatttcctgttgaatgccgactttgtc
aacttggaaaaaaccgtattcaagaaatctcaaactcttgataatgtttgcacgggaccg
gaaaacacattcaagacgcctgacgccggcaattacgtggttcgatacggagaacgtgtg
ctcatgacatacaaggctggatccaactacagaaaatgcattgggacatatgatgttgat
gatgacttgttcacatgtgtcatgccaactgataataatggatttgaaggacttgagatg
ggcggattcttgtatgatccagtgactggtgaacctcaccgcgacgatggatcggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCCGATGTACCAAGTGGGCTTCG 411 145 106 Antisense
GTTGTTCCGGCGGCCGAAGGTGATT 369 435 148 Antisense
TTCTCGACGGCGTCTTCACATTTTC 400 693 254 Antisense
GGGTCAAACTTTTGTATGCCGTTCA 322 497 319 Antisense
TTTCCTGTTGAATGCCGACTTTGTC 337 669 381 Antisense
GATAATGTTTGCACGGGACCGGAAA 172 421 445 Antisense
AAAACACATTCAAGACGCCTGACGC 310 129 467 Antisense
GACGCCGGCAATTACGTGGTTCGAT 80 375 487 Antisense
GACTTGTTCACATGTGTCATGCCAA 300 371 589 Antisense
GATCCAGTGACTGGTGAACCTCACC 39 417 661 Antisense
ACCTCACCGCGACGATGGATCGGTC 126 85 678 Antisense
Sequence Source Affymetrix Proprietary Database