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[178033_at]

Description F56H6.6 /REP_DB=WormBase Gene ID /WP=CE16134 /TR=O45584 /GB=CAB04495.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 25      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 49.2
(-3)
A 		59.8
(-2.2)
A 		51.8
(-2.8)
A 		129.3
(3)
P 		80
B 37.3
(-3)
A 		76.2
(2.1)
P 		83
(3)
A 		56.9
(-0.4)
A 		46
C 51.8
(-2.5)
M 		84.7
(1.7)
M 		47.8
(-3)
A 		95.1
(3)
P 		47
avr 46.1
(-3) 		73.6
(0.5) 		60.9
(-1.1) 		93.8
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 60.5
(3)
A 		6.9
(-3)
A 		57.6
(2.7)
A 		41.8
(0.9)
A 		42.9
(1)
A 		47
(1.5)
A 		54
B 62.1
(3)
P 		43.3
(-1.5)
A 		50.9
(0.3)
A 		40.1
(-2.2)
A 		36.9
(-3)
A 		39.6
(-2.4)
A 		25
C 57.7
(3)
A 		52.2
(2)
A 		56.8
(2.8)
A 		23
(-3)
A 		27.5
(-2.2)
A 		46
(1)
A 		35
avr 60.1
(3) 		34.1
(-3) 		55.1
(1.8) 		35
(-2.8) 		35.8
(-2.6) 		44.2
(-0.7) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 17.9
(2)
A 		13
(-3)
A 		13.5
(-2.5)
A 		18.9
(3)
P 		6
B 11.9
(-3)
A 		18.8
(2.7)
P 		19.2
(3)
A 		12.1
(-2.8)
A 		7
C 17.2
(-2.1)
M 		24.3
(3)
M 		16.7
(-2.5)
A 		16
(-3)
P 		8
avr 15.7
(-3) 		18.7
(3) 		16.5
(-1.4) 		15.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.2
(2)
A 		2.5
(-3)
A 		12.5
(2.8)
A 		10.6
(1.7)
A 		12.9
(3)
A 		11.4
(2.1)
A 		10
B 21.6
(3)
P 		14.4
(-0.9)
A 		12.4
(-2)
A 		10.6
(-3)
A 		15
(-0.6)
A 		14.8
(-0.7)
A 		11
C 21.4
(3)
A 		15.9
(1)
A 		14.5
(0.5)
A 		4.6
(-3)
A 		8.9
(-1.5)
A 		15.4
(0.9)
A 		17
avr 18.1
(3) 		10.9
(-1.5) 		13.1
(-0.2) 		8.6
(-3) 		12.3
(-0.7) 		13.9
(0.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1781
Sequence Type Exemplar sequence
Representative Public ID F56H6.6 NCBI
Target Description F56H6.6 /REP_DB=WormBase Gene ID /WP=CE16134 /TR=O45584 /GB=CAB04495.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060706 NCBI Caenorhabditis elegans F56H6.6 (F56H6.6) mRNA, complete cds. 11/11 None
SNAP00000044656 ENSEMBL cdna:SNAP chromosome:CEL140:I:12302502:12304385:-1 11/11 None
GENEFINDER00000044664 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12302502:12304385:-1 11/11 None
F56H6.6 ENSEMBL cdna:known chromosome:CEL140:I:12302502:12304385:-1 gene:F56H6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12302432-12304316(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H6.6
Entrez Gene 186417 Entrez gene
SwissProt O45584 EMBL-EBI
WormBase CE16134 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04495 Hypothetical protein F56H6.6 [Caenorhabditis elegans] ref|NP_493107.1| F56H6.6 [Caenorhabditis elegans] 0.0
blast CAB05464 Hypothetical protein C54C8.2 [Caenorhabditis elegans] ref|NP_493157.1| C54C8.2 [Caenorhabditis elegans] 1.0E-143
blast CAB05464 Hypothetical protein C54C8.2 [Caenorhabditis elegans] ref|NP_493157.1| C54C8.2 [Caenorhabditis elegans] 1.0E-135
blast CAE17897 Hypothetical protein K08H2.9 [Caenorhabditis elegans] ref|NP_001024774.1| K08H2.9 [Caenorhabditis elegans] 1.0E-132
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493107.1 1 4-26
F56H6.6 1 4-26
GENEFINDER00000044664 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:178033_AT
ggagcaacttctgatctacacttgatagtcgacgctgatatgacaatgagctctgatttt
gcgagaaaagtgaagccaatcgcaaatcgcataattgatgggaaacagagacaagttttg
gtagttcgacgttttgagacaaacgaagatgagattccactggaagttgagcagctgaag
atgggatttgagaatcaaaaagtattcgagttccatcacaattttttctttattgggcat
aaaattccagacgtggaaaaatggtttcacgcctcgaagacagaaaatgaagtgactgcc
tgggaaattccatactcaggaaatgcatgggaagtgcaagtgattcttcaccggaacgac
atgtacaacgccgagtactttccgtctagaatccgagacatgcagtctttgatctacggt
ctctgccgagccaactacaccttcaacttgctctctcacgtattcaatgttcaccaaggc
atcaaagaggatgacacaatgtactcgaaagttgtcacagctcactcgaagcgatatgga
aggaatagagcattctcccgctacgtccatgagatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAACTTCTGATCTACACTTGA 282 519 553 Antisense
GAAGCCAATCGCAAATCGCATAATT 403 345 624 Antisense
AAGTATTCGAGTTCCATCACAATTT 540 155 752 Antisense
AAAATGGTTTCACGCCTCGAAGACA 162 131 810 Antisense
GACTGCCTGGGAAATTCCATACTCA 216 367 846 Antisense
AGTGATTCTTCACCGGAACGACATG 704 59 891 Antisense
GGAACGACATGTACAACGCCGAGTA 54 531 905 Antisense
CCGAGTACTTTCCGTCTAGAATCCG 602 259 923 Antisense
CGAAAGTTGTCACAGCTCACTCGAA 110 253 1058 Antisense
GAAGGAATAGAGCATTCTCCCGCTA 449 333 1091 Antisense
TCTCCCGCTACGTCCATGAGATGAA 685 609 1106 Antisense
Sequence Source Affymetrix Proprietary Database