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[178032_at]

Description F08G5.2 /REP_DB=WormBase Gene ID /WP=CE05572 /TR=Q19221 /GB=CAA94584.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 79      6grp_total > 79      4grp_total > 34      6grp_cgc > 59      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 8.7
(-3)
A 		110.4
(1.5)
A 		45
(-1.4)
A 		143
(3)
A 		134
B 65.5
(-0)
A 		77.3
(3)
A 		53.9
(-3)
P 		68.3
(0.7)
A 		23
C 50.8
(-3)
A 		103.5
(3)
A 		60.5
(-1.9)
A 		77.6
(0.1)
A 		53
avr 41.7
(-3) 		97.1
(3) 		53.1
(-1.8) 		96.3
(2.9) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 109.1
(0.5)
P 		50.9
(-1.8)
A 		42
(-2.1)
P 		18.7
(-3)
A 		147.8
(1.9)
P 		175.4
(3)
P 		157
B 67.1
(-1.6)
A 		63
(-1.7)
A 		49.8
(-2.2)
A 		26
(-3)
A 		153
(1.3)
P 		201.8
(3)
P 		176
C 54.6
(-2.4)
A 		68.2
(-1.9)
P 		40.7
(-3)
A 		69.3
(-1.9)
P 		92.9
(-0.9)
P 		191.9
(3)
P 		151
avr 76.9
(-1.5) 		60.7
(-2.1) 		44.2
(-2.8) 		38
(-3) 		131.2
(0.7) 		189.7
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 3.2
(-3)
A 		24
(3)
A 		11.8
(-0.5)
A 		20.9
(2.1)
A 		21
B 20.9
(3)
A 		19.1
(1.7)
A 		12.5
(-3)
P 		14.6
(-1.5)
A 		8
C 16.8
(-1.7)
A 		29.8
(3)
A 		21.1
(-0.1)
A 		13.1
(-3)
A 		17
avr 13.6
(-3) 		24.3
(3) 		15.1
(-2.2) 		16.2
(-1.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 20.1
(-0.7)
P 		18.1
(-1)
A 		9.2
(-2.3)
P 		4.7
(-3)
A 		44.6
(3)
P 		42.7
(2.7)
P 		40
B 23.3
(-1.6)
A 		21
(-1.8)
A 		12.1
(-2.5)
A 		6.9
(-3)
A 		62.2
(1.9)
P 		75.3
(3)
P 		68
C 20.2
(-1.9)
A 		20.8
(-1.8)
P 		10.4
(-3)
A 		13.9
(-2.6)
P 		30.1
(-0.8)
P 		64.2
(3)
P 		54
avr 21.2
(-1.5) 		20
(-1.7) 		10.6
(-2.8) 		8.5
(-3) 		45.6
(1.3) 		60.7
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9986
Sequence Type Exemplar sequence
Representative Public ID F08G5.2 NCBI
Target Description F08G5.2 /REP_DB=WormBase Gene ID /WP=CE05572 /TR=Q19221 /GB=CAA94584.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069969 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-13) (acl-13) mRNA, complete cds. 11/11 None
SNAP00000043806 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12410473:12413305:1 11/11 None
GENEFINDER00000043820 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12410473:12412844:1 11/11 None
F08G5.2 ENSEMBL cdna:known chromosome:CEL140:IV:12410473:12412153:1 gene:F08G5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12410478-12412159(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol acl-13
Ensembl F08G5.2
Entrez Gene 184203 Entrez gene
SwissProt Q19221 EMBL-EBI
WormBase CE05572 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94584 Hypothetical protein F08G5.2 [Caenorhabditis elegans] ref|NP_502370.1| ACyLtransferase-like family member (acl-13) [Caenorhabditis elegans] 0.0
blast CAE59857 Hypothetical protein CBG03331 [Caenorhabditis briggsae] 1.0E-162
blast CAE59857 Hypothetical protein CBG03331 [Caenorhabditis briggsae] 1.0E-160
blast CAE70215 Hypothetical protein CBG16693 [Caenorhabditis briggsae] 1.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502370.1 3 21-43,124-146,340-362
F08G5.2 3 21-43,124-146,340-362
SNAP00000043806 2 21-52,338-355
GENEFINDER00000043820 2 21-52,338-357
Sequence
Target Sequence 
>C. ELEGANS:178032_AT
gttccaccgcacaagagagcacagacattgcacagtttgagacgccactttgaccgtatc
tatcacgaagtagacctccgttggctttgtctttatccagaaggatctcgactttttctc
atccaaaagcgaaattctgaattcgagaagaaaagaggattgcctccactcacgaattgt
gcgtatccacgtcttggcgctgctctgagtgctatcaaagttcttggaccagatccaaat
aatccattgaaatcaaataatggaaaaggaccaccactcgaatatctggttgatgttact
cttggttatccagatggaaatattcttccattaaatgaaattttcatgtcagcgtggcgg
aatggtggtggaaaaccctttgcgattcattatgagatctttaaaatggatcccaagtgg
aaagatgaagaagaactcaaaaatttcttgtttgatcggtatcagaagaaggataagcta
ttggagtcgtactacaaaactggaagtttctcatcggaatcaaaagaagctcaattccca
tctgacatgattcttattggattccatattcttataatgggcctttttgcactactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCACCGCACAAGAGAGCACAGA 84 441 478 Antisense
GACATTGCACAGTTTGAGACGCCAC 439 371 501 Antisense
CGCCACTTTGACCGTATCTATCACG 684 257 520 Antisense
GAAGGATCTCGACTTTTTCTCATCC 134 335 577 Antisense
TGCCTCCACTCACGAATTGTGCGTA 545 585 638 Antisense
GCGCTGCTCTGAGTGCTATCAAAGT 375 287 674 Antisense
AAAAGGACCACCACTCGAATATCTG 42 131 741 Antisense
GAAATTTTCATGTCAGCGTGGCGGA 273 363 814 Antisense
GGTGGAAAACCCTTTGCGATTCATT 248 497 844 Antisense
TCAATTCCCATCTGACATGATTCTT 478 633 1008 Antisense
TATAATGGGCCTTTTTGCACTACTC 596 659 1050 Antisense
Sequence Source Affymetrix Proprietary Database