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[178031_at]

Description C27H2.3 /REP_DB=WormBase Gene ID /WP=CE15641 /TR=O45269 /GB=CAB05123.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 24      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 51      6grp_total > 02      4grp_total > 58      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 409.8
(-3)
P 		565.1
(3)
P 		522.5
(1.4)
P 		425.5
(-2.4)
P 		155
B 408.1
(0)
P 		523.8
(3)
P 		481.6
(1.9)
P 		290
(-3)
P 		234
C 428.8
(0.7)
P 		475.4
(2.4)
P 		490.6
(3)
P 		330.1
(-3)
P 		161
avr 415.6
(-0.7) 		521.4
(3) 		498.2
(2.2) 		348.5
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 617
(1.3)
P 		708.6
(3)
P 		481.1
(-1.2)
P 		519.1
(-0.5)
P 		537.6
(-0.1)
P 		381.9
(-3)
P 		327
B 612.9
(3)
P 		611.6
(3)
P 		416.4
(-3)
P 		521.4
(0.2)
P 		522.5
(0.2)
P 		460.9
(-1.6)
P 		197
C 481.3
(-1.8)
P 		686.1
(3)
P 		434.3
(-2.9)
P 		515.5
(-1)
P 		497.1
(-1.4)
P 		431
(-3)
P 		255
avr 570.4
(0.6) 		668.8
(3) 		443.9
(-2.5) 		518.7
(-0.7) 		519.1
(-0.7) 		424.6
(-3) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 149.2
(3)
P 		122.7
(1.2)
P 		136.6
(2.1)
P 		62.3
(-3)
P 		87
B 130.1
(3)
P 		129.4
(2.9)
P 		111.6
(1.4)
P 		61.8
(-3)
P 		68
C 142
(1.5)
P 		136.7
(1.2)
P 		171
(3)
P 		55.7
(-3)
P 		115
avr 140.4
(3) 		129.6
(2.2) 		139.7
(2.9) 		59.9
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 113.7
(-2.2)
P 		252
(3)
P 		104.8
(-2.6)
P 		131.6
(-1.5)
P 		162.2
(-0.4)
P 		93
(-3)
P 		159
B 213.3
(3)
P 		203.6
(2.5)
P 		101.1
(-3)
P 		138.1
(-1)
P 		212.3
(2.9)
P 		171.9
(0.8)
P 		112
C 178.4
(1.2)
P 		209.3
(3)
P 		110.5
(-2.6)
P 		103.7
(-3)
P 		160.9
(0.3)
P 		144.3
(-0.7)
P 		106
avr 168.5
(0.3) 		221.6
(3) 		105.5
(-3) 		124.5
(-2) 		178.5
(0.8) 		136.4
(-1.4) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8514
Sequence Type Exemplar sequence
Representative Public ID C27H2.3 NCBI
Target Description C27H2.3 /REP_DB=WormBase Gene ID /WP=CE15641 /TR=O45269 /GB=CAB05123.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070279 NCBI Caenorhabditis elegans C27H2.3 (C27H2.3) mRNA, complete cds. 11/11 None
SNAP00000005807 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13956359:13963703:1 11/11 None
GENEFINDER00000005813 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13952559:13963703:1 11/11 None
C27H2.3 ENSEMBL cdna:known chromosome:CEL140:IV:13952684:13963969:1 gene:C27H2.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13957166-13963709(+) 99.79 99.79
Public Domain and Genome References
Gene Title
Ensembl C27H2.3
Entrez Gene 178356 Entrez gene
SwissProt O45269 EMBL-EBI
WormBase CE15641 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05123 Hypothetical protein C27H2.3 [Caenorhabditis elegans] ref|NP_502680.1| C27H2.3 [Caenorhabditis elegans] 0.0
blast CAE74663 Hypothetical protein CBG22464 [Caenorhabditis briggsae] 0.0
blast CAE71779 Hypothetical protein CBG18780 [Caenorhabditis briggsae] 7.0E-86
blast CAE71779 Hypothetical protein CBG18780 [Caenorhabditis briggsae] 7.0E-68
Sequence
Target Sequence 
>C. ELEGANS:178031_AT
tgctgaatctataatctgccttctaaacgatgcagttcaaaaggattgctctcacgtaac
agtcttccatttcgtcggaattttcaaagggcgacattttgagccatatattgagaatat
gggacatgacgcgtggatggttacactactcgatacagaacatattcaaaaagtggcaca
agttgtcgatagactctcgaatgtgccagttgtcccaccattggagtcgctgaagcattt
gggtgttctgttggcgagaggagattttcgaatttctatgattgttgaacaatatcttcg
aaatgccaatggtcatttattatctgatctattatcatcttatctctgccttcttgagga
tgataatactgatgctcgtcttggagcactaaaggctcttgccattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGAATCTATAATCTGCCTTCTA 261 583 1815 Antisense
AAAGGATTGCTCTCACGTAACAGTC 441 119 1854 Antisense
CGTAACAGTCTTCCATTTCGTCGGA 209 247 1869 Antisense
GGATGGTTACACTACTCGATACAGA 246 515 1949 Antisense
AGACTCTCGAATGTGCCAGTTGTCC 610 71 2005 Antisense
TTGTCCCACCATTGGAGTCGCTGAA 337 709 2024 Antisense
AAGCATTTGGGTGTTCTGTTGGCGA 495 151 2047 Antisense
ATCTATTATCATCTTATCTCTGCCT 13 33 2141 Antisense
TTATCTCTGCCTTCTTGAGGATGAT 561 679 2154 Antisense
GGATGATAATACTGATGCTCGTCTT 233 513 2172 Antisense
AGCACTAAAGGCTCTTGCCATTTTT 47 71 2199 Antisense
Sequence Source Affymetrix Proprietary Database