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[178030_at]

Description F10A3.3 /REP_DB=WormBase Gene ID /WP=CE15770 /TR=O45336 /GB=CAB07341.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 20      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 35.3
(-0.8)
A 		8.4
(-3)
A 		33
(-1)
A 		81.4
(3)
P 		73
B 29.7
(-0.1)
A 		57.5
(3)
A 		4.5
(-3)
A 		30
(-0.1)
A 		53
C 34.7
(1.5)
M 		40.6
(2.6)
A 		9.5
(-3)
A 		42.8
(3)
A 		33
avr 33.2
(-0.1) 		35.5
(0.3) 		15.7
(-3) 		51.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 43.3
(-1.2)
A 		60.4
(0.9)
P 		62.8
(1.2)
P 		77.6
(3)
P 		48.1
(-0.6)
A 		28.8
(-3)
A 		49
B 59.3
(2.1)
A 		66.4
(3)
P 		54.5
(1.5)
P 		60.1
(2.2)
A 		50.7
(1)
A 		18.9
(-3)
A 		48
C 25.8
(-2.4)
A 		62.6
(0.2)
P 		102.9
(3)
P 		79.2
(1.3)
P 		17.5
(-3)
A 		25.5
(-2.4)
A 		85
avr 42.8
(-0.7) 		63.1
(1.7) 		73.4
(3) 		72.3
(2.9) 		38.8
(-1.2) 		24.4
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.8
(3)
A 		1.8
(-3)
A 		8.6
(0.7)
A 		11.9
(2.5)
P 		11
B 9.5
(0.9)
A 		14.2
(3)
A 		1
(-3)
A 		6.4
(-0.5)
A 		13
C 11.5
(2.9)
M 		11.7
(3)
A 		3.3
(-3)
A 		7.2
(-0.2)
A 		8
avr 11.3
(3) 		9.2
(1.2) 		4.3
(-3) 		8.5
(0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8
(-2.6)
A 		21.5
(3)
P 		13.7
(-0.2)
P 		19.7
(2.3)
P 		14.5
(0.1)
A 		7
(-3)
A 		15
B 20.6
(2.4)
A 		22.1
(3)
P 		13.2
(-0.5)
P 		15.9
(0.5)
A 		20.6
(2.4)
A 		7
(-3)
A 		15
C 9.6
(-1.9)
A 		19.1
(0.9)
P 		26.2
(3)
P 		15.9
(-0)
P 		5.7
(-3)
A 		8.5
(-2.2)
A 		21
avr 12.7
(-0.7) 		20.9
(3) 		17.7
(1.6) 		17.2
(1.3) 		13.6
(-0.3) 		7.5
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13891
Sequence Type Exemplar sequence
Representative Public ID F10A3.3 NCBI
Target Description F10A3.3 /REP_DB=WormBase Gene ID /WP=CE15770 /TR=O45336 /GB=CAB07341.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074665 NCBI Caenorhabditis elegans F10A3.3 (F10A3.3) mRNA, complete cds. 11/11 None
SNAP00000000092 ENSEMBL cdna:SNAP chromosome:CEL140:V:16146198:16147236:1 9/11 None
GENEFINDER00000000107 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16146198:16147236:1 10/11 None
F10A3.3 ENSEMBL cdna:known chromosome:CEL140:V:16146198:16147236:1 gene:F10A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16146197-16147236(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10A3.3
Entrez Gene 184274 Entrez gene
SwissProt O45336 EMBL-EBI
WormBase CE15770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07341 Hypothetical protein F10A3.3 [Caenorhabditis elegans] ref|NP_507066.1| F10A3.3 [Caenorhabditis elegans] 1.0E-105
blast CAB07341 Hypothetical protein F10A3.3 [Caenorhabditis elegans] ref|NP_507066.1| F10A3.3 [Caenorhabditis elegans] 1.0E-102
blast CAB07341 Hypothetical protein F10A3.3 [Caenorhabditis elegans] ref|NP_507066.1| F10A3.3 [Caenorhabditis elegans] 1.0E-86
blast CAB07340 Hypothetical protein F10A3.2 [Caenorhabditis elegans] ref|NP_507065.2| F10A3.2 [Caenorhabditis elegans] 1.0E-11
blast CAB60959 Hypothetical protein Y59A8B.11 [Caenorhabditis elegans] ref|NP_507530.1| Y59A8B.11 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.4E-9
Sequence
Target Sequence 
>C. ELEGANS:178030_AT
ggagccggagggagctagcataaacaaaataaaacagtcattgtttgttaatcttccggc
agatgttatcaatgaaattttgaaaaagttgacgccaatcgataaactgactctccgaaa
agtttgtacattcttccgtgacaccatagatagcaaagcttatggcttcaaaatcatcga
gtttcatcttctttttgattgggtcatgttagttctagacaaggaaatattcaaatatgc
cagcagagaacaacatggatgctgggttagcaacggactaaatgagcatcatttccaaga
ggaatactttttgaaacttgccattgacgacttggcagtaatactgaaagatcaaagtca
gaagctggatttgttagaagtctgcgtatgcgatcgtgctacaaaacgttctcgggatta
ctttttccctgcacttcttaagatgctggttacagttgattaccgtaaaatcgaaaagtt
cgacggtgattttccagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCCGGAGGGAGCTAGCATAAAC 263 521 24 Antisense
GTCATTGTTTGTTAATCTTCCGGCA 199 469 60 Antisense
GACGCCAATCGATAAACTGACTCTC 208 381 114 Antisense
GTACATTCTTCCGTGACACCATAGA 453 459 149 Antisense
AATCATCGAGTTTCATCTTCTTTTT 230 171 195 Antisense
TTTGAAACTTGCCATTGACGACTTG 629 667 333 Antisense
GAAGTCTGCGTATGCGATCGTGCTA 483 335 400 Antisense
GATCGTGCTACAAAACGTTCTCGGG 36 415 415 Antisense
TCTCGGGATTACTTTTTCCCTGCAC 275 609 433 Antisense
TTCCCTGCACTTCTTAAGATGCTGG 185 699 448 Antisense
AAAGTTCGACGGTGATTTTCCAGAG 8 1 498 Antisense
Sequence Source Affymetrix Proprietary Database