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[178029_at]

Description C07E3.6 /REP_DB=WormBase Gene ID /WP=CE02984 /TR=Q17792 /GB=CAA90100.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 09      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 81      6grp_total > 03      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 267.9
(-2.4)
P 		258.4
(-3)
P 		272.4
(-2.1)
P 		351.9
(3)
P 		94
B 208.1
(-3)
P 		393.5
(3)
P 		282.9
(-0.6)
P 		218
(-2.7)
P 		185
C 302.6
(-0.3)
P 		402.8
(3)
P 		219.1
(-3)
P 		228
(-2.7)
P 		184
avr 259.5
(-2.9) 		351.6
(3) 		258.1
(-3) 		266
(-2.5) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 344.2
(3)
P 		292.6
(0.8)
P 		205.1
(-3)
P 		283.9
(0.4)
P 		211.1
(-2.7)
P 		314.3
(1.7)
P 		139
B 369.2
(3)
P 		289
(0.3)
P 		190
(-3)
P 		281.5
(0.1)
P 		303.7
(0.8)
P 		207.3
(-2.4)
P 		179
C 276.6
(-0.8)
P 		368.7
(3)
P 		277.4
(-0.8)
P 		342.6
(1.9)
P 		307.9
(0.5)
P 		224.4
(-3)
P 		144
avr 330
(3) 		316.8
(2.3) 		224.2
(-3) 		302.7
(1.5) 		274.2
(-0.2) 		248.7
(-1.6) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 97.5
(3)
P 		56.1
(-2.4)
P 		71.2
(-0.4)
P 		51.5
(-3)
P 		46
B 66.3
(-0.7)
P 		97.2
(3)
P 		65.5
(-0.8)
P 		46.5
(-3)
P 		51
C 100.2
(1.8)
P 		115.8
(3)
P 		76.4
(-0.1)
P 		38.4
(-3)
P 		77
avr 88
(2.8) 		89.7
(3) 		71
(0.5) 		45.5
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 63.4
(-1.1)
P 		104.1
(3)
P 		44.7
(-3)
P 		72
(-0.2)
P 		63.7
(-1.1)
P 		76.5
(0.2)
P 		59
B 128.5
(3)
P 		96.2
(0.6)
P 		46.1
(-3)
P 		74.6
(-0.9)
P 		123.4
(2.6)
P 		77.3
(-0.7)
P 		82
C 102.5
(1.6)
P 		112.5
(3)
P 		70.6
(-2.8)
P 		68.9
(-3)
P 		99.6
(1.2)
P 		75.1
(-2.1)
P 		44
avr 98.1
(2.3) 		104.3
(3) 		53.8
(-3) 		71.8
(-0.9) 		95.6
(2) 		76.3
(-0.3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3939
Sequence Type Exemplar sequence
Representative Public ID C07E3.6 NCBI
Target Description C07E3.6 /REP_DB=WormBase Gene ID /WP=CE02984 /TR=Q17792 /GB=CAA90100.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063833 NCBI Caenorhabditis elegans C07E3.6 (C07E3.6) mRNA, complete cds. 11/11 None
SNAP00000023203 ENSEMBL cdna:SNAP chromosome:CEL140:II:10367822:10369471:-1 11/11 None
GENEFINDER00000023207 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10367822:10369492:-1 11/11 None
C07E3.6 ENSEMBL cdna:known chromosome:CEL140:II:10367822:10369507:-1 gene:C07E3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10368167-10369489(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07E3.6
Entrez Gene 182371 Entrez gene
SwissProt Q17792 EMBL-EBI
WormBase CE35825 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90100 Hypothetical protein C07E3.6 [Caenorhabditis elegans] ref|NP_496234.3| C07E3.6 [Caenorhabditis elegans] 1.0E-160
blast CAA90100 Hypothetical protein C07E3.6 [Caenorhabditis elegans] ref|NP_496234.3| C07E3.6 [Caenorhabditis elegans] 1.0E-156
blast CAE59382 Hypothetical protein CBG02738 [Caenorhabditis briggsae] 2.0E-41
blast T19053 hypothetical protein C07E3.7 - Caenorhabditis elegans 7.0E-12
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 6.99999988529321E-11
Pfam IPR001356 EMBL-EBI Homeobox 1.3E-8
Pfam IPR001356 EMBL-EBI Homeobox 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:178029_AT
gaccaacatcgagacctgatcgggccaataattaatcaattggtagccgactacgggact
cccgtctcaattgtggataatattcaaaaaatctgtccgaaatgctcgtgtaccccacat
gccaatccggacagctcatcagttccaactacaacaagttccgatgagcatcaagaagaa
cccccgactccaaaaacgatagcacctgctccaattgcgactccagttctaaagccactt
cttccacaacgagagtctattgtctcaaatggaattcatccggtggttgtgaaacgaaaa
caatcgatcgcagaagaaattgacacgccggagatcaaaaagagccgagttgtggagcca
gtgaaatttactggatcaggaggaagtagtgatgatggagcatccaattctagcaatatt
tatgatgtcgatgatgaggattatggaacttctcaatggaatccagattttttaaccaac
ttcatcacttctcaaccgaatattttcagcgtaactggtcagaatataaaatcctcccct
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCAACATCGAGACCTGATCGGGC 531 383 55 Antisense
GGACTCCCGTCTCAATTGTGGATAA 99 525 110 Antisense
ATCTGTCCGAAATGCTCGTGTACCC 42 33 145 Antisense
ACAGCTCATCAGTTCCAACTACAAC 47 109 185 Antisense
GAGCATCAAGAAGAACCCCCGACTC 161 383 220 Antisense
AAACGATAGCACCTGCTCCAATTGC 589 125 248 Antisense
CTCCAATTGCGACTCCAGTTCTAAA 692 235 263 Antisense
CCACTTCTTCCACAACGAGAGTCTA 545 275 289 Antisense
AAGAGCCGAGTTGTGGAGCCAGTGA 291 153 394 Antisense
TTTAACCAACTTCATCACTTCTCAA 427 655 525 Antisense
GGTCAGAATATAAAATCCTCCCCTT 425 503 571 Antisense
Sequence Source Affymetrix Proprietary Database