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[178028_at]

Description F20C5.5 /REP_DB=WormBase Gene ID /WP=CE03242 /TR=Q19636 /GB=CAA92298.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 55      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 14.4
(3)
A 		12.8
(1)
A 		11
(-1.3)
A 		9.6
(-3)
A 		5
B 36.6
(3)
A 		2.6
(-2.8)
A 		18.4
(-0.1)
A 		1.5
(-3)
A 		35
C 59.9
(3)
A 		5.2
(-3)
A 		8.5
(-2.6)
A 		9
(-2.6)
A 		55
avr 37
(3) 		6.9
(-3) 		12.6
(-1.8) 		6.7
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 33.4
(-0.4)
A 		20.5
(-2.2)
A 		58.9
(3)
A 		46.3
(1.3)
A 		25.5
(-1.5)
A 		14.3
(-3)
A 		45
B 45.7
(3)
A 		34.2
(1.4)
A 		42.4
(2.5)
A 		4.3
(-2.7)
A 		2.4
(-2.9)
A 		2
(-3)
A 		44
C 29
(-1.4)
A 		29.2
(-1.4)
A 		70
(3)
A 		17.7
(-2.6)
A 		14
(-3)
A 		14.3
(-3)
A 		56
avr 36
(0.3) 		28
(-0.7) 		57.1
(3) 		22.8
(-1.4) 		14
(-2.5) 		10.2
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 5.2
(3)
A 		2.8
(-0.8)
A 		2.9
(-0.6)
A 		1.4
(-3)
A 		4
B 11.7
(3)
A 		0.6
(-2.8)
A 		4.3
(-0.9)
A 		0.3
(-3)
A 		11
C 19.8
(3)
A 		1.5
(-3)
A 		3
(-2.5)
A 		1.5
(-3)
A 		18
avr 12.2
(3) 		1.6
(-2.7) 		3.4
(-1.8) 		1.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.2
(-1.3)
A 		7.3
(-0.5)
A 		12.8
(3)
A 		11.7
(2.3)
A 		7.7
(-0.3)
A 		3.5
(-3)
A 		9
B 15.9
(3)
A 		11.4
(1.2)
A 		10.3
(0.8)
A 		1.1
(-2.9)
A 		1
(-2.9)
A 		0.8
(-3)
A 		15
C 10.7
(0)
A 		8.9
(-0.8)
A 		17.8
(3)
A 		3.6
(-3)
A 		4.5
(-2.6)
A 		4.8
(-2.5)
A 		14
avr 10.9
(1.5) 		9.2
(0.5) 		13.6
(3) 		5.5
(-1.6) 		4.4
(-2.2) 		3
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9930
Sequence Type Exemplar sequence
Representative Public ID F20C5.5 NCBI
Target Description F20C5.5 /REP_DB=WormBase Gene ID /WP=CE03242 /TR=Q19636 /GB=CAA92298.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069111 NCBI Caenorhabditis elegans F20C5.5 (F20C5.5) mRNA, complete cds. 11/11 None
SNAP00000022218 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8767867:8769621:-1 11/11 None
GENEFINDER00000022221 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8767867:8770098:-1 11/11 None
F20C5.5 ENSEMBL cdna:known chromosome:CEL140:IV:8767670:8769801:-1 gene:F20C5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8767872-8769807(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20C5.5
Entrez Gene 177686 Entrez gene
SwissProt Q19636 EMBL-EBI
WormBase CE03242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92298 Hypothetical protein F20C5.5 [Caenorhabditis elegans] ref|NP_501512.1| F20C5.5 [Caenorhabditis elegans] 0.0
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 8.0E-15
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 1.0E-14
blast XP_648808 hypothetical protein 388.t00006 [Entamoeba histolytica HM-1:IMSS] gb|EAL43426.1| hypothetical protein 388.t00006 [Entamoeba histolytica HM-1:IMSS] 7.0E-11
blast XP_648808 hypothetical protein 388.t00006 [Entamoeba histolytica HM-1:IMSS] gb|EAL43426.1| hypothetical protein 388.t00006 [Entamoeba histolytica HM-1:IMSS] 8.0E-11
Sequence
Target Sequence 
>C. ELEGANS:178028_AT
gactagtagaacatatccccatttggaacaagaaattttgacgttccattctgaaaaaat
ttctgatccttccgaagaggcaaaccaggaggtcagagaattcccacttgagcaaacatt
agaaaaactgaaacttgaacagacagaaagtcttgtcgcaattcttgaacaacccggagg
actcaaaactatgcgaaatgacccgcaatggttgcaggtggttgatcatttctgtgatta
tgtacgaaagattgaaaaacttgaagaaaatgttaaagaagaacaaatgaatactgaaat
gattatgaaagaaagaactcgagaaatcactgagctatattatcagaaaagagttcttga
gaagaagatttcagagcaatttaaagagattcaacaagttaaatctgaaatctcgagagt
ttatgaagcaaatatccaggaaattcaaaaatcgtttgatattaagctgaaactgaagga
tcagataattggagaattggaagctgtagatgagatgtcatcaaatcatacggaattatc
cgatggatggagcgatctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTAGTAGAACATATCCCCATTTG 246 371 1356 Antisense
GAAATTTTGACGTTCCATTCTGAAA 425 363 1387 Antisense
GAAAAAATTTCTGATCCTTCCGAAG 238 353 1408 Antisense
GATCCTTCCGAAGAGGCAAACCAGG 78 381 1420 Antisense
GAGGTCAGAGAATTCCCACTTGAGC 217 403 1444 Antisense
GAAAGTCTTGTCGCAATTCTTGAAC 164 361 1501 Antisense
ATTCTTGAACAACCCGGAGGACTCA 487 11 1516 Antisense
CCCGGAGGACTCAAAACTATGCGAA 234 259 1528 Antisense
GCGAAATGACCCGCAATGGTTGCAG 499 287 1548 Antisense
TGGTTGCAGGTGGTTGATCATTTCT 681 549 1564 Antisense
TATCCGATGGATGGAGCGATCTCGA 271 657 1892 Antisense
Sequence Source Affymetrix Proprietary Database