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[178026_at]

Description W04G5.4 /REP_DB=WormBase Gene ID /WP=CE14588 /TR=O18169 /GB=CAB07681.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 30.3
(-1.4)
A 		26.3
(-2.2)
A 		21.8
(-3)
A 		54.6
(3)
A 		33
B 31.2
(-2.1)
A 		44.8
(3)
A 		28.8
(-3)
A 		36.2
(-0.2)
A 		16
C 9.3
(-3)
A 		18
(-1.5)
A 		31.6
(1)
A 		43
(3)
A 		34
avr 23.6
(-3) 		29.7
(-1.3) 		27.4
(-1.9) 		44.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 14.7
(1.3)
A 		18.8
(3)
A 		4
(-3)
A 		11
(-0.2)
A 		6.4
(-2)
A 		7.3
(-1.7)
A 		15
B 37.8
(3)
A 		25.9
(0.9)
A 		27.8
(1.2)
A 		4.2
(-3)
A 		25.5
(0.8)
A 		15.7
(-0.9)
A 		34
C 14.7
(-0.6)
A 		13
(-0.9)
A 		33.2
(3)
A 		9.1
(-1.6)
A 		9.3
(-1.6)
A 		2
(-3)
A 		31
avr 22.4
(3) 		19.2
(1.7) 		21.7
(2.7) 		8.1
(-3) 		13.7
(-0.7) 		8.3
(-2.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 11
(3)
A 		5.7
(-3)
A 		5.7
(-3)
A 		8
(-0.4)
A 		5
B 9.9
(1.4)
A 		11.1
(3)
A 		6.7
(-3)
A 		7.7
(-1.6)
A 		4
C 3.1
(-3)
A 		5.2
(-1.4)
A 		11
(3)
A 		7.3
(0.2)
A 		8
avr 8
(3) 		7.3
(-3) 		7.8
(1.3) 		7.7
(0.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.7
(-1.1)
A 		6.7
(3)
A 		0.9
(-3)
A 		2.8
(-1)
A 		1.9
(-2)
A 		1.8
(-2.1)
A 		6
B 13.1
(3)
A 		8.6
(0.8)
A 		6.8
(-0.2)
A 		1.1
(-3)
A 		10.4
(1.7)
A 		5.8
(-0.7)
A 		12
C 5.4
(0.7)
A 		4
(-0.4)
A 		8.4
(3)
A 		1.8
(-2.1)
A 		3
(-1.2)
A 		0.7
(-3)
A 		8
avr 7.1
(3) 		6.4
(2.2) 		5.4
(1) 		1.9
(-3) 		5.1
(0.7) 		2.8
(-2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2276
Sequence Type Exemplar sequence
Representative Public ID W04G5.4 NCBI
Target Description W04G5.4 /REP_DB=WormBase Gene ID /WP=CE14588 /TR=O18169 /GB=CAB07681.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060564 NCBI Caenorhabditis elegans W04G5.4 (W04G5.4) mRNA, complete cds. 11/11 None
GENEFINDER00000044258 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11638186:11640969:1 9/11 None
SNAP00000044249 ENSEMBL cdna:SNAP chromosome:CEL140:I:11639790:11640969:1 11/11 None
W04G5.4 ENSEMBL cdna:known chromosome:CEL140:I:11638186:11640823:1 gene:W04G5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11638116-11640754(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G5.4
Entrez Gene 189200 Entrez gene
SwissProt O18169 EMBL-EBI
WormBase CE14588 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07681 Hypothetical protein W04G5.4 [Caenorhabditis elegans] ref|NP_492965.1| W04G5.4 [Caenorhabditis elegans] 0.0
blast CAB07681 Hypothetical protein W04G5.4 [Caenorhabditis elegans] ref|NP_492965.1| W04G5.4 [Caenorhabditis elegans] 1.0E-130
blast CAB07681 Hypothetical protein W04G5.4 [Caenorhabditis elegans] ref|NP_492965.1| W04G5.4 [Caenorhabditis elegans] 1.0E-113
blast AAC27091 Hypothetical protein C04E12.5 [Caenorhabditis elegans] ref|NP_503935.2| C04E12.5 [Caenorhabditis elegans] 2.0E-66
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 2.0E-64
blast AAC27091 Hypothetical protein C04E12.5 [Caenorhabditis elegans] ref|NP_503935.2| C04E12.5 [Caenorhabditis elegans] 8.0E-35
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 2.0E-34
blast AAF59492 Hypothetical protein Y50D4B.7 [Caenorhabditis elegans] ref|NP_503374.1| Y50D4B.7 [Caenorhabditis elegans] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 5.9E-45
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.2E-43
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.2E-43
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 5.9E-45
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.2E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000044249 1 31-50
Sequence
Target Sequence 
>C. ELEGANS:178026_AT
tttacaccacttaccaatgccattttcagaataagacgtgatagcaacgaagctggtcca
tattccaccaaagttccgtctatggatcatgaaactgctatcaagaaaattgtggctgtg
acggctcctaacaatgaacccgatcgaaaccatgctggtataacatcgacatcctttacg
tatcaaaacaagccaatcaaattgagtcctccaagctcaggagataactacgtaaaattt
acgtataacgttatcagcaatacctactcacagacacatgaagatggttcgaaaattgat
tcattttacgtttttaatattgaacgagttgaggacaggagtttgaatcaagtatattta
cgcaaaagaaacacactttttatgggatcgattacttggcagttcatctgggagctcgtt
ggaaaatcaatcgagaaaatagtcattaaaattgccggaatagaagaatatctcaaatat
gtggatggaggaaatgccaatgcgtgtctgacatttttagctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACACCACTTACCAATGCCATTT 631 673 862 Antisense
CAACGAAGCTGGTCCATATTCCACC 330 187 906 Antisense
TATTCCACCAAAGTTCCGTCTATGG 17 665 922 Antisense
AAATTGTGGCTGTGACGGCTCCTAA 677 113 968 Antisense
GACGGCTCCTAACAATGAACCCGAT 561 375 981 Antisense
GAACCCGATCGAAACCATGCTGGTA 326 345 997 Antisense
AACATCGACATCCTTTACGTATCAA 665 137 1023 Antisense
TCAGCAATACCTACTCACAGACACA 35 625 1115 Antisense
GGGATCGATTACTTGGCAGTTCATC 698 495 1245 Antisense
CAGTTCATCTGGGAGCTCGTTGGAA 275 207 1261 Antisense
GCGTGTCTGACATTTTTAGCTGCCA 268 293 1363 Antisense
Sequence Source Affymetrix Proprietary Database