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[178025_s_at]

Description W09C5.1 /REP_DB=WormBase Gene ID /WP=CE20164 /TR=Q9XTD3 /GB=CAA21705.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 47      6grp_total > 74      4grp_total > 03      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11773
1 2 3 4 range
A 4250.2
(-1.8)
P 		1868.4
(-3)
P 		2800.3
(-2.5)
P 		13591.4
(3)
P 		11723
B 3537.7
(-2.5)
P 		2683
(-2.9)
P 		2551.4
(-3)
P 		13465.9
(3)
P 		10915
C 4349.1
(-2)
P 		2487.6
(-3)
P 		3077.3
(-2.7)
P 		13641.1
(3)
P 		11154
avr 4045.7
(-2.1) 		2346.3
(-3) 		2809.7
(-2.8) 		13566.1
(3) 		11220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2207
1 2 3 4 5 6 range
A 2688.8
(-3)
P 		2932.4
(-2.1)
P 		3914.9
(1.8)
P 		4231.3
(3)
P 		3092.5
(-1.4)
P 		3772.8
(1.2)
P 		1543
B 3830.6
(-1.7)
P 		3670.4
(-3)
P 		4373.8
(2.7)
P 		3670.3
(-3)
P 		4405.2
(3)
P 		3855.6
(-1.5)
P 		735
C 3543.1
(-1.2)
P 		3432.7
(-1.5)
P 		2944.8
(-3)
P 		4895.3
(3)
P 		3494.8
(-1.3)
P 		4287.3
(1.1)
P 		1951
avr 3354.2
(-2.9) 		3345.2
(-3) 		3744.5
(-0.4) 		4265.6
(3) 		3664.2
(-0.9) 		3971.9
(1.1) 		920
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2464
1 2 3 4 range
A 1547.5
(1.3)
P 		405.6
(-3)
P 		732
(-1.8)
P 		1989.5
(3)
P 		1584
B 1128.2
(-1.6)
P 		662.7
(-2.8)
P 		591.2
(-3)
P 		2869.6
(3)
P 		2278
C 1439.7
(-0.3)
P 		715.2
(-3)
P 		1072.5
(-1.6)
P 		2300.1
(3)
P 		1585
avr 1371.8
(-0.4) 		594.5
(-3) 		798.6
(-2.3) 		2386.4
(3) 		1792

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1294
1 2 3 4 5 6 range
A 495.7
(-3)
P 		1042.9
(2.7)
P 		852.6
(0.7)
P 		1073.2
(3)
P 		933.2
(1.5)
P 		918.6
(1.4)
P 		578
B 1332.9
(-0.4)
P 		1221.7
(-1.2)
P 		1062.1
(-2.3)
P 		972.1
(-3)
P 		1789.8
(3)
P 		1437.7
(0.4)
P 		818
C 1313.3
(1.9)
P 		1047.4
(-0.4)
P 		749.5
(-3)
P 		984.4
(-0.9)
P 		1130.9
(0.3)
P 		1435.2
(3)
P 		686
avr 1047.3
(-0.6) 		1104
(0.3) 		888.1
(-3) 		1009.9
(-1.2) 		1284.6
(3) 		1263.8
(2.7) 		397
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178025_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1476
Sequence Type Exemplar sequence
Representative Public ID W09C5.1 NCBI
Target Description W09C5.1 /REP_DB=WormBase Gene ID /WP=CE20164 /TR=Q9XTD3 /GB=CAA21705.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060986 NCBI Caenorhabditis elegans W09C5.1 (W09C5.1) mRNA, complete cds. 11/11 None
W09C5.1.2 ENSEMBL cdna:known chromosome:CEL140:I:13634641:13636568:-1 gene:W09C5.1 11/11 None
W09C5.1.1 ENSEMBL cdna:known chromosome:CEL140:I:13634641:13636566:-1 gene:W09C5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13634713-13636458(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09C5.1
Entrez Gene 173232 Entrez gene
SwissProt Q9XTD3 EMBL-EBI
WormBase CE20164 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250703_AT ribosomal protein S8e family protein at
CANINE:1599456_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) cfa
CANINE:1591610_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) cfa
CANINE:1589798_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) cfa
CANINE_2:CFA.11121.1.S1_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) cfa
CANINE_2:CFA.11121.3.S1_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) cfa
CANINE_2:CFA.11121.3.S1_S_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) cfa
DROSOPHILA_2:1623045_AT Intronic Protein 259 dm
DROSGENOME1:153317_AT Intronic Protein 259 dm
CHICKEN:GGA.11441.1.S1_S_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) gga
HG-U133A:201922_AT TGF beta-inducible nuclear protein 1 hs
HG-U133A_2:201922_AT TGF beta-inducible nuclear protein 1 hs
HG-U133_PLUS_2:201922_AT TGF beta-inducible nuclear protein 1 hs
HU35KSUBA:RC_AA232252_AT TGF beta-inducible nuclear protein 1 hs
HU35KSUBA:H84451_AT TGF beta-inducible nuclear protein 1 hs
U133_X3P:G7662676_3P_S_AT TGF beta-inducible nuclear protein 1 hs
HG-U95AV2:38106_AT TGF beta-inducible nuclear protein 1 hs
HG-U133_PLUS_2:241265_X_AT TGF beta-inducible nuclear protein 1 hs
HG-U133B:241265_X_AT TGF beta-inducible nuclear protein 1 hs
HG-U95D:85382_AT TGF beta-inducible nuclear protein 1 hs
U133_X3P:HS.93828.1.A1_3P_AT TGF beta-inducible nuclear protein 1 hs
U133_X3P:HS.93828.1.A1_3P_X_AT TGF beta-inducible nuclear protein 1 hs
U133_X3P:241265_3P_X_AT TGF beta-inducible nuclear protein 1 hs
MOUSE430_2:1423131_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) mm
MOE430A:1423131_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) mm
MOUSE430A_2:1423131_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) mm
MOUSE430_2:1423132_A_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) mm
MOE430A:1423132_A_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) mm
MOUSE430A_2:1423132_A_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) mm
MU11KSUBA:AA606494_S_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) mm
MG-U74BV2:108001_AT similar to TGF beta-inducible nuclear protein 1 (L-name related LNR42) mm
RG-U34B:RC_AA901155_AT CDK105 protein rn
RAE230A:1398801_AT CDK105 protein rn
RAT230_2:1398801_AT CDK105 protein rn
YEAST_2:1771490_AT Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21705 Hypothetical protein W09C5.1 [Caenorhabditis elegans] emb|CAB04941.1| Hypothetical protein W09C5.1 [Caenorhabditis elegans] ref|NP_493387.1| W09C5.1 [Caenorhabditis elegans] 1.0E-147
blast CAE72589 Hypothetical protein CBG19778 [Caenorhabditis briggsae] 1.0E-145
blast XP_783243 PREDICTED: similar to TGF beta-inducible nuclear protein 1 (Hairy cell leukemia protein 1) (HUSSY-29) [Strongylocentrotus purpuratus] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR001047 EMBL-EBI Ribosomal protein S8E 7.9E-102
Sequence
Target Sequence 
>C. ELEGANS:178025_S_AT
gagcagttccagcatatcttctcgacagacagcagcagacttcaggaacagtgctctcga
atatgattaagcagaagagaaagcagaaggctggaaagttcaacgtcccaattccacaag
tacgagctgtcagtgatgctgaagcgtttaaagtcgtgaaaaccggaaaaacgaatcgta
aaggatggaagagaatggtgacaaaagtcacattcgtcggcgagtcattcacccgaaaac
ccgcgaaattcgaacgattcattcgtccgatgggacttcgtttcaagaaggcacacgtca
cacatccagaacttcagacgacattccatttgccaattgttggtgttaagaagaatccgt
cgagtcaaatgtacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGTTCCAGCATATCTTCTCGA 478 389 260 Antisense
ATCTTCTCGACAGACAGCAGCAGAC 10 31 275 Antisense
GCAGACTTCAGGAACAGTGCTCTCG 665 311 294 Antisense
GCTGGAAAGTTCAACGTCCCAATTC 707 293 349 Antisense
GTCCCAATTCCACAAGTACGAGCTG 420 459 364 Antisense
GTCACATTCGTCGGCGAGTCATTCA 488 465 466 Antisense
CGTCCGATGGGACTTCGTTTCAAGA 638 215 523 Antisense
GTTTCAAGAAGGCACACGTCACACA 636 439 539 Antisense
ACGTCACACATCCAGAACTTCAGAC 239 93 554 Antisense
CTTCAGACGACATTCCATTTGCCAA 588 219 571 Antisense
GAATCCGTCGAGTCAAATGTACACA 649 329 612 Antisense
Sequence Source Affymetrix Proprietary Database