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[178024_at]

Description F19B2.6 /REP_DB=WormBase Gene ID /WP=CE20698 /TR=Q9XXS6 /GB=CAA16273.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 27.8
(-1.2)
A 		4.8
(-3)
A 		19.9
(-1.8)
A 		79.6
(3)
P 		75
B 40
(-1)
A 		30
(-3)
A 		37.3
(-1.5)
A 		59.5
(3)
P 		30
C 7.1
(-3)
A 		19.6
(-0.6)
A 		27
(0.7)
A 		39
(3)
P 		32
avr 25
(-2) 		18.1
(-3) 		28.1
(-1.5) 		59.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 5.6
(-3)
A 		42.4
(0.8)
A 		64.3
(3)
P 		48.2
(1.4)
A 		54
(1.9)
A 		49.8
(1.5)
M 		59
B 49.5
(-0.9)
A 		35.9
(-3)
A 		46.2
(-1.4)
P 		68
(2)
P 		74.4
(3)
P 		42.9
(-1.9)
P 		39
C 27.4
(-1.4)
M 		55
(3)
P 		17.5
(-3)
A 		42.6
(1)
A 		38.4
(0.3)
A 		50
(2.2)
A 		38
avr 27.5
(-3) 		44.4
(0.6) 		42.7
(0.2) 		52.9
(2.4) 		55.6
(3) 		47.6
(1.3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.1
(2.1)
A 		1
(-3)
A 		5.2
(-0.6)
A 		11.7
(3)
P 		11
B 12.8
(3)
A 		7.4
(-3)
A 		8.7
(-1.6)
A 		12.7
(2.9)
P 		5
C 2.4
(-3)
A 		5.6
(-0.3)
A 		9.4
(3)
A 		6.6
(0.6)
P 		7
avr 8.4
(1) 		4.7
(-3) 		7.8
(0.3) 		10.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1
(-3)
A 		15.1
(2.5)
A 		14
(2.1)
P 		12.2
(1.4)
A 		16.3
(3)
A 		12.1
(1.4)
M 		15
B 17.2
(-1.1)
A 		11.9
(-2.8)
A 		11.2
(-3)
P 		18
(-0.9)
P 		30.2
(3)
P 		16
(-1.5)
P 		19
C 10.1
(-0.2)
M 		16.8
(3)
P 		4.4
(-3)
A 		8.6
(-1)
A 		12.4
(0.9)
A 		16.7
(3)
A 		12
avr 9.4
(-3) 		14.6
(0.1) 		9.9
(-2.7) 		12.9
(-0.9) 		19.6
(3) 		14.9
(0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14517
Sequence Type Exemplar sequence
Representative Public ID F19B2.6 NCBI
Target Description F19B2.6 /REP_DB=WormBase Gene ID /WP=CE20698 /TR=Q9XXS6 /GB=CAA16273.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075484(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075484 NCBI Caenorhabditis elegans F19B2.6 (F19B2.6) mRNA, complete cds. 10/11 None
GENEFINDER00000019294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20156523:20159497:1 10/11 None
F19B2.6 ENSEMBL cdna:known chromosome:CEL140:V:20156523:20159497:1 gene:F19B2.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019286 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20156522-20159497(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B2.6
Entrez Gene 184664 Entrez gene
SwissProt Q9XXS6 EMBL-EBI
WormBase CE35496 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16273 Hypothetical protein F19B2.6 [Caenorhabditis elegans] ref|NP_507885.2| F19B2.6 [Caenorhabditis elegans] 0.0
blast CAI79269 Hypothetical protein Y60A3A.25 [Caenorhabditis elegans] ref|NP_001024275.1| Y60A3A.25 [Caenorhabditis elegans] 4.0E-31
blast CAB81974 Hypothetical protein Y116F11B.6 [Caenorhabditis elegans] ref|NP_507844.1| Y116F11B.6 [Caenorhabditis elegans] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:178024_AT
aatcggaacgtttaacatcattcgaagttatgatgaggtgcaggagggctttgcacaatt
cgaaaatgataaacaaaatatcattagtaaagtggattatttgatgaaaactgatcgaaa
tctgaaaaagctgagaatggccaaggaggtatcagaaaaacaatgggaacagtttgaaac
tgacaagaaaaacagaaaagaggatgacaagaaaaacaaaataaatggaggaaacaaatt
gaatgtaaaaaataatgtcagtatttcaaactcaaagtccgacgattttcagggaaaaac
aaaaattgtcagttcaataacaattgcaacccgctgtagtcggtcaaaagacaaaaagga
aactgatgctttcaaacacgatgcgaaagttctgaaatttgaaagctcgaaacaaacgca
aatcaagttatgtctgaaaaagtactgtgacaagttttatccgggtgttcgaatgttgtt
gcaacacaattggaaattcttaagggataatgcactacacagcggacaaagtgtgcagct
ggagaaattgatcgaatgtctgaagactttccacttaacggagcacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGGAACGTTTAACATCATTCGA 190 169 1866 Antisense
GCAGGAGGGCTTTGCACAATTCGAA 322 311 1905 Antisense
AACTCAAAGTCCGACGATTTTCAGG 691 139 2134 Antisense
ATTGCAACCCGCTGTAGTCGGTCAA 403 5 2188 Antisense
ACTGATGCTTTCAAACACGATGCGA 627 95 2227 Antisense
GTACTGTGACAAGTTTTATCCGGGT 386 455 2307 Antisense
ATCCGGGTGTTCGAATGTTGTTGCA 36 37 2324 Antisense
GGGATAATGCACTACACAGCGGACA 534 495 2369 Antisense
GCGGACAAAGTGTGCAGCTGGAGAA 57 293 2387 Antisense
GATCGAATGTCTGAAGACTTTCCAC 524 417 2415 Antisense
GACTTTCCACTTAACGGAGCACGCT 416 371 2430 Antisense
Sequence Source Affymetrix Proprietary Database