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[178022_s_at]

Description F14F3.3 /REP_DB=WormBase Gene ID /WP=CE02189 /TR=Q19468 /GB=CAA90185.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 52      6grp_total > 30      4grp_total > 41      6grp_highest_sub > 02      6grp_cgc > 72      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 752.3
(-1.5)
P 		1011
(3)
P 		931.5
(1.6)
P 		668.9
(-3)
P 		342
B 610.2
(-3)
P 		804.4
(1.2)
P 		796.4
(1)
P 		886.3
(3)
P 		276
C 733
(-3)
P 		833.1
(-0.5)
P 		971.1
(3)
P 		893.8
(1.1)
P 		238
avr 698.5
(-3) 		882.8
(2.5) 		899.7
(3) 		816.3
(0.5) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 543
1 2 3 4 5 6 range
A 729.6
(0.8)
P 		737.4
(1)
P 		862.8
(3)
P 		821
(2.3)
P 		491.8
(-3)
P 		502.9
(-2.8)
P 		371
B 694.7
(-0.2)
P 		986.6
(3)
P 		700.9
(-0.2)
P 		742.2
(0.3)
P 		444.5
(-3)
P 		572.1
(-1.6)
P 		542
C 507.5
(-2.1)
P 		894.4
(3)
P 		799.5
(1.7)
P 		835.3
(2.2)
P 		443.3
(-3)
P 		568.2
(-1.3)
P 		451
avr 643.9
(-0.3) 		872.8
(3) 		787.7
(1.8) 		799.5
(1.9) 		459.9
(-3) 		547.7
(-1.7) 		413
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 273.9
(3)
P 		219.5
(1.1)
P 		243.5
(2)
P 		97.9
(-3)
P 		176
B 194.6
(1.3)
P 		198.7
(3)
P 		184.5
(-3)
P 		188.9
(-1.1)
P 		14
C 242.7
(-0.1)
P 		239.5
(-0.2)
P 		338.5
(3)
P 		150.7
(-3)
P 		188
avr 237.1
(2) 		219.2
(1) 		255.5
(3) 		145.8
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 134.5
(-2.5)
P 		262.3
(3)
P 		187.9
(-0.2)
P 		208.2
(0.7)
P 		148.4
(-1.9)
P 		122.4
(-3)
P 		140
B 241.7
(-0.3)
P 		328.4
(3)
P 		170.2
(-3)
P 		196.6
(-2)
P 		180.6
(-2.6)
P 		213.3
(-1.4)
P 		158
C 188.1
(-0.9)
P 		272.9
(3)
P 		203.5
(-0.2)
P 		168
(-1.9)
P 		143.4
(-3)
P 		190.2
(-0.8)
P 		130
avr 188.1
(-1.6) 		287.9
(3) 		187.2
(-1.6) 		190.9
(-1.5) 		157.5
(-3) 		175.3
(-2.2) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178022_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16162
Sequence Type Exemplar sequence
Representative Public ID F14F3.3 NCBI
Target Description F14F3.3 /REP_DB=WormBase Gene ID /WP=CE02189 /TR=Q19468 /GB=CAA90185.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077359 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-289) (tag-289) mRNA, complete cds. 11/11 None
GENEFINDER00000003728 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10520860:10524483:-1 9/11 None
SNAP00000003725 ENSEMBL cdna:SNAP chromosome:CEL140:X:10521890:10524632:-1 11/11 None
F14F3.3 ENSEMBL cdna:known chromosome:CEL140:X:10521759:10524632:-1 gene:F14F3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10521889-10524632(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-289
Ensembl F14F3.3
Entrez Gene 181252 Entrez gene
SwissProt Q19468 EMBL-EBI
WormBase CE02189 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639346_AT dm
DROSGENOME1:153900_AT dm
HG-U133_PLUS_2:211037_S_AT leukocyte receptor cluster (LRC) member 4 hs
HG-U133A:211037_S_AT leukocyte receptor cluster (LRC) member 4 hs
HG-U133A_2:211037_S_AT leukocyte receptor cluster (LRC) member 4 hs
HG-U95AV2:180_AT leukocyte receptor cluster (LRC) member 4 hs
HC-G110:180_AT leukocyte receptor cluster (LRC) member 4 hs
HG-U95AV2:181_G_AT leukocyte receptor cluster (LRC) member 4 hs
HC-G110:181_G_AT leukocyte receptor cluster (LRC) member 4 hs
HG-U133_PLUS_2:209179_S_AT leukocyte receptor cluster (LRC) member 4 hs
HG-U133A_2:209179_S_AT leukocyte receptor cluster (LRC) member 4 hs
HG-U133A:209179_S_AT leukocyte receptor cluster (LRC) member 4 hs
HG-FOCUS:209179_S_AT leukocyte receptor cluster (LRC) member 4 hs
HU35KSUBC:RC_AA448227_S_AT leukocyte receptor cluster (LRC) member 4 hs
HU35KSUBD:RC_AA485432_AT leukocyte receptor cluster (LRC) member 4 hs
HUGENEFL:S82470_AT leukocyte receptor cluster (LRC) member 4 hs
U133_X3P:G13623420_3P_S_AT leukocyte receptor cluster (LRC) member 4 hs
U133_X3P:G13111982_3P_A_AT leukocyte receptor cluster (LRC) member 4 hs
HG-U95B:56120_AT leukocyte receptor cluster (LRC) member 4 hs
MOUSE430A_2:1451066_AT leukocyte receptor cluster (LRC) member 4 mm
MOE430A:1451066_AT leukocyte receptor cluster (LRC) member 4 mm
MOUSE430_2:1451066_AT leukocyte receptor cluster (LRC) member 4 mm
MG-U74BV2:110279_AT leukocyte receptor cluster (LRC) member 4 mm
MOE430B:1457997_AT leukocyte receptor cluster (LRC) member 4 mm
MOUSE430_2:1457997_AT leukocyte receptor cluster (LRC) member 4 mm
MU19KSUBC:TC41825_AT Leukocyte receptor cluster (LRC) member 4 (Leng4), mRNA mm
RAE230A:1372680_AT Similar to malignant cell expression-enhanced gene/tumor progression-enhanc (predicted) rn
RAT230_2:1372680_AT Similar to malignant cell expression-enhanced gene/tumor progression-enhanc (predicted) rn
RG-U34A:RC_AA894212_AT Similar to malignant cell expression-enhanced gene/tumor progression-enhanc (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA90185 Hypothetical protein F14F3.3 [Caenorhabditis elegans] ref|NP_509760.1| Temporarily Assigned Gene name family member (tag-289) [Caenorhabditis elegans] 0.0
blast CAE60794 Hypothetical protein CBG04485 [Caenorhabditis briggsae] 0.0
blast BAB31950.1 unnamed protein product [Mus musculus] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 5.4E-72
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 5.4E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509760.1 8 59-78,82-99,106-128,182-201,221-238,248-267,374-396,445-467
F14F3.3 8 59-78,82-99,106-128,182-201,221-238,248-267,374-396,445-467
GENEFINDER00000003728 8 13-30,45-67,79-101,155-174,194-211,221-240,245-267,347-369
SNAP00000003725 8 59-78,82-99,106-128,182-201,221-238,248-267,374-396,445-467
Sequence
Target Sequence 
>C. ELEGANS:178022_S_AT
gtgcctgggcaattgcggagtcgatttgtgttattctcggaatcggaatttacccagctg
cttcaaatccaaaaatcatcatgggaccaacggatttgaatgctttcgataagctgaaaa
caagagaaaacattgaaatgagcagtgacgcaattgttaatttagatattccaaaagttg
agttttctgatggattccgcgatggaatgaaagcttggaacagatcggttcaaacgtggc
tggctctttatgtgcattcgcgcgttaaagtgatgagagtggagacaactatgctagtat
ctgctgtctggcacggaacatatgctggatacttcatgtcatttggagttgtcgccatgt
gtgctatcttagaagacgtgattttcaagttggtccctgttgatacagaaacaggagttc
gtccaaagtggttccgcattttatatacgcatacaattcgctgtcgtggatttgagatgc
tcgccactggctttttgctaaaaaatgcatacgacgttcatcatttctggtcttcaatct
attactggttacctcttctctgcattccgttctacatttacagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCTGGGCAATTGCGGAGTCGAT 201 479 830 Antisense
TACCCAGCTGCTTCAAATCCAAAAA 295 649 880 Antisense
TGGCTGGCTCTTTATGTGCATTCGC 471 545 1066 Antisense
ACTATGCTAGTATCTGCTGTCTGGC 365 99 1117 Antisense
AGTTGTCGCCATGTGTGCTATCTTA 31 65 1176 Antisense
GTGATTTTCAAGTTGGTCCCTGTTG 546 481 1207 Antisense
GAGTTCGTCCAAAGTGGTTCCGCAT 646 397 1244 Antisense
TGCTCGCCACTGGCTTTTTGCTAAA 655 581 1307 Antisense
GCATACGACGTTCATCATTTCTGGT 326 309 1336 Antisense
TCTATTACTGGTTACCTCTTCTCTG 206 615 1367 Antisense
TGCATTCCGTTCTACATTTACAGTG 104 577 1390 Antisense
Sequence Source Affymetrix Proprietary Database